JAL-3269 ready for testing embedded interface

[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index 1dd7b25..75b0add 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -2077,6 +2077,7 @@ public class JalviewLite extends Applet
    * @param list
    * @return elements separated by separator
    */
+  @Override
   public String[] separatorListToArray(String list)
   {
     return JalviewAppLoader.separatorListToArray(list, separator);
@@ -2556,21 +2557,38 @@ public class JalviewLite extends Applet
     return new jalview.appletgui.FeatureRenderer((AlignmentViewport) vp);
   }
 
-  /**
-   * bind structures in a viewer to any matching sequences in an alignFrame (use
-   * sequenceIds to limit scope of search to specific sequences)
-   * 
-   * @param alFrame
-   * @param viewer
-   * @param sequenceIds
-   * @return TODO: consider making an exception structure for indicating when
-   *         binding fails public SequenceStructureBinding
-   *         addStructureViewInstance( AlignFrame alFrame, Object viewer, String
-   *         sequenceIds) {
-   * 
-   *         if (sequenceIds != null && sequenceIds.length() > 0) { return
-   *         alFrame.addStructureViewInstance(viewer,
-   *         separatorListToArray(sequenceIds)); } else { return
-   *         alFrame.addStructureViewInstance(viewer, null); } // return null; }
-   */
+  @Override
+  public String getSelectedSequencesAsAlignment(String format,
+          boolean suffix)
+  {
+    // TODO Auto-generated method stub
+    return null;
+  }
+
+  @Override
+  public String getSelectedSequencesAsAlignmentFrom(AlignFrameI alf,
+          String format, boolean suffix)
+  {
+    // TODO Auto-generated method stub
+    return null;
+  }
+
+  // /**
+  // * bind structures in a viewer to any matching sequences in an alignFrame
+  // (use
+  // * sequenceIds to limit scope of search to specific sequences)
+  // *
+  // * @param alFrame
+  // * @param viewer
+  // * @param sequenceIds
+  // * @return TODO: consider making an exception structure for indicating when
+  // * binding fails public SequenceStructureBinding
+  // * addStructureViewInstance( AlignFrame alFrame, Object viewer, String
+  // * sequenceIds) {
+  // *
+  // * if (sequenceIds != null && sequenceIds.length() > 0) { return
+  // * alFrame.addStructureViewInstance(viewer,
+  // * separatorListToArray(sequenceIds)); } else { return
+  // * alFrame.addStructureViewInstance(viewer, null); } // return null; }
+  // */
 }