}\r
\r
String format = jalview.io.IdentifyFile.Identify(args[0],"File");\r
- SequenceI[] sequences = FormatAdapter.readFile(args[0], "File", format);\r
+ SequenceI[] sequences = new FormatAdapter().readFile(args[0], "File", format);\r
\r
if ( (sequences != null) && (sequences.length > 0))\r
{\r
public void run()\r
{\r
SequenceI[] sequences = null;\r
- sequences = FormatAdapter.readFile(file, protocol, format);\r
+ sequences = new FormatAdapter().readFile(file, protocol, format);\r
\r
if ((sequences != null) && (sequences.length > 0))\r
{\r