vamsasDemo new branch

[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index 1e94a0d..a263ed4 100755 (executable)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -80,7 +80,9 @@ public class JalviewLite extends Applet
         if (file != null)\r
         {\r
             add(launcher);\r
-            file = applet.getCodeBase() + file;\r
+            if(!file.startsWith("http://") && !file.startsWith("file://"))\r
+               file = applet.getCodeBase() + file;\r
+\r
             launcher.addActionListener(new java.awt.event.ActionListener()\r
                 {\r
                     public void actionPerformed(ActionEvent e)\r
@@ -108,7 +110,7 @@ public class JalviewLite extends Applet
 \r
 \r
       String format = jalview.io.IdentifyFile.Identify(args[0],"File");\r
-      SequenceI[] sequences = new FormatAdapter().readFile(args[0], "File", format);\r
+      SequenceI[] sequences = new AppletFormatAdapter().readFile(args[0], "File", format);\r
 \r
       if ( (sequences != null) && (sequences.length > 0))\r
       {\r
@@ -227,7 +229,7 @@ public class JalviewLite extends Applet
         public void run()\r
         {\r
             SequenceI[] sequences = null;\r
-            sequences = new FormatAdapter().readFile(file, protocol, format);\r
+            sequences = new AppletFormatAdapter().readFile(file, protocol, format);\r
 \r
             if ((sequences != null) && (sequences.length > 0))\r
             {\r