JAL-3609 changed property names to something more palatable and catered for portrait...

[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index a60496c..e7f2a53 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -198,7 +198,7 @@ public class JalviewLite extends Applet
       int apos = -1;
       try
       {
-        apos = new Integer(position).intValue();
+        apos = Integer.valueOf(position).intValue();
         apos--;
       } catch (NumberFormatException ex)
       {
@@ -337,7 +337,7 @@ public class JalviewLite extends Applet
           int from = -1, to = -1;
           try
           {
-            from = new Integer(cl.substring(0, p)).intValue();
+            from = Integer.valueOf(cl.substring(0, p)).intValue();
             from--;
           } catch (NumberFormatException ex)
           {
@@ -348,7 +348,7 @@ public class JalviewLite extends Applet
           }
           try
           {
-            to = new Integer(cl.substring(p + 1)).intValue();
+            to = Integer.valueOf(cl.substring(p + 1)).intValue();
             to--;
           } catch (NumberFormatException ex)
           {
@@ -408,7 +408,7 @@ public class JalviewLite extends Applet
           int r = -1;
           try
           {
-            r = new Integer(cl).intValue();
+            r = Integer.valueOf(cl).intValue();
             r--;
           } catch (NumberFormatException ex)
           {
@@ -1176,7 +1176,7 @@ public class JalviewLite extends Applet
         try
         {
           StructureSelectionManager.getStructureSelectionManager(me)
-                  .mouseOverStructure(new Integer(pdbResNum).intValue(),
+                  .mouseOverStructure(Integer.valueOf(pdbResNum).intValue(),
                           chain, pdbfile);
           if (debug)
           {
@@ -1212,8 +1212,8 @@ public class JalviewLite extends Applet
       {
         try
         {
-          alf.scrollTo(new Integer(topRow).intValue(),
-                  new Integer(leftHandColumn).intValue());
+          alf.scrollTo(Integer.valueOf(topRow).intValue(),
+                  Integer.valueOf(leftHandColumn).intValue());
 
         } catch (Exception ex)
         {
@@ -1244,7 +1244,7 @@ public class JalviewLite extends Applet
       {
         try
         {
-          alf.scrollToRow(new Integer(topRow).intValue());
+          alf.scrollToRow(Integer.valueOf(topRow).intValue());
 
         } catch (Exception ex)
         {
@@ -1276,7 +1276,7 @@ public class JalviewLite extends Applet
       {
         try
         {
-          alf.scrollToColumn(new Integer(leftHandColumn).intValue());
+          alf.scrollToColumn(Integer.valueOf(leftHandColumn).intValue());
 
         } catch (Exception ex)
         {
@@ -1333,7 +1333,7 @@ public class JalviewLite extends Applet
   private boolean alignPdbStructures = false;
 
   /**
-   * use an external structure viewer exclusively (no jmols or MCViews will be
+   * use an external structure viewer exclusively (no jmols or mc_views will be
    * opened by JalviewLite itself)
    */
   public boolean useXtrnalSviewer = false;
@@ -1798,7 +1798,7 @@ public class JalviewLite extends Applet
           if (!jmolAvailable)
           {
             System.out.println(
-                    "Jmol not available - Using MCview for structures");
+                    "Jmol not available - Using mc_view for structures");
           }
         } catch (java.lang.ClassNotFoundException ex)
         {
@@ -1810,7 +1810,7 @@ public class JalviewLite extends Applet
         if (debug)
         {
           System.err.println(
-                  "Skipping Jmol check. Will use MCView (probably)");
+                  "Skipping Jmol check. Will use mc_view (probably)");
         }
       }
       checkedForJmol = true;