Merge branch 'develop' into JAL-1483_featureBasedTreeCalc

[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index d3f03be..ef48bf9 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -1978,7 +1978,7 @@ public class JalviewLite extends Applet implements
         param = applet.getParameter("showFeatureSettings");
         if (param != null && param.equalsIgnoreCase("true"))
         {
-          newAlignFrame.viewport.showSequenceFeatures(true);
+          newAlignFrame.viewport.setShowSequenceFeatures(true);
           new FeatureSettings(newAlignFrame.alignPanel);
         }
 
@@ -2141,6 +2141,8 @@ public class JalviewLite extends Applet implements
                 if (seqs[i] != null)
                 {
                   ((Sequence) seqs[i]).addPDBId(pdb);
+                  StructureSelectionManager.getStructureSelectionManager(
+                          applet).registerPDBEntry(pdb);
                 }
                 else
                 {