JAL-845 code/refactoring/tests related to linking DNA and protein

[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index ae8bc98..f596a9c 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -60,6 +60,7 @@ import java.io.BufferedReader;
 import java.io.InputStreamReader;
 import java.net.URL;
 import java.util.Hashtable;
+import java.util.List;
 import java.util.StringTokenizer;
 import java.util.Vector;
 
@@ -447,12 +448,11 @@ public class JalviewLite extends Applet implements
         end = rs.findIndex(end);
         if (csel != null)
         {
-          Vector cs = csel.getSelected();
+          List<Integer> cs = csel.getSelected();
           csel.clear();
-          for (int csi = 0, csiS = cs.size(); csi < csiS; csi++)
+          for (Integer selectedCol : cs)
           {
-            csel.addElement(rs.findIndex(((Integer) cs.elementAt(csi))
-                    .intValue()));
+            csel.addElement(rs.findIndex(selectedCol));
           }
         }
       }