boolean embedded = false;
- public boolean jmolAvailable = true;
+ public boolean jmolAvailable = false;
/**
* init method for Jalview Applet
{
try
{
- Class.forName("org.jmol.adapter.smarter.SmarterJmolAdapter");
-
- jmolAvailable = true;
+ if (!System.getProperty("java.version").startsWith("1.1"))
+ {
+ Class.forName("org.jmol.adapter.smarter.SmarterJmolAdapter");
+ jmolAvailable = true;
+ }
}
catch (java.lang.ClassNotFoundException ex)
{
- System.out.println("Jmol not found - Using MCview for structures");
+ System.out.println("Jmol not available - Using MCview for structures");
}
int r = 255;
pdb.setFile(param);
+ for(int i=0; i<seqs.length; i++)
+ {
+ ((Sequence)seqs[i]).addPDBId(pdb);
+ }
if (jmolAvailable)
new jalview.appletgui.AppletJmol(pdb,