QUESTIONNAIRE(Type.CONFIG,
"Show (or don't show) the questionnaire if one is available.",
true, Opt.BOOLEAN, Opt.BOOTSTRAP),
+ JAVACONSOLE(Type.CONFIG, "Show (or don't show) the Java Console.", false,
+ Opt.BOOLEAN, Opt.BOOTSTRAP),
NOUSAGESTATS(Type.CONFIG, "Don't send initial launch usage stats.",
Opt.UNARY, Opt.BOOTSTRAP),
NOSTARTUPFILE(Type.CONFIG, "Don't show the default startup file.",
TEMPFAC(Type.STRUCTURE,
"Set the type of temperature factor. Possible values are:\n"
+ "default,\n" + "plddt.",
- Opt.STRING, Opt.LINKED, Opt.ALLOWMULTIID),
+ Opt.STRING, Opt.LINKED, Opt.MULTIVALUE, Opt.ALLOWMULTIID),
STRUCTUREVIEWER(Type.STRUCTURE,
"Set the structure viewer to use to open the 3D structure file specified in previous --structure to name. Possible values of name are:\n"
+ "none,\n" + "jmol,\n" + "chimera,\n" + "chimerax,\n"
NOTEMPFAC(Type.STRUCTURE,
"Do not show the temperature factor annotation for the preceding --structure.",
Opt.UNARY, Opt.LINKED, Opt.ALLOWMULTIID, Opt.SECRET), // keep this
- // secret
- // until it works!
+ // secret until
+ // it works!
SHOWSSANNOTATIONS(Type.STRUCTURE, null, Opt.BOOLEAN, Opt.LINKED,
Opt.ALLOWMULTIID),
+ " (or none) will apply. Valid values are the same as "
+ Arg.COLOUR.argString() + ".",
Opt.STRING, Opt.LINKED, Opt.MULTIVALUE, Opt.ALLOWMULTIID),
+ BGCOLOUR(Type.IMAGE, "bgcolor", // being a bit soft on the Americans!
+ "Applies a background colour to the structure image. Valid values are named colours known to Java or RRGGBB 6 digit hex-string.",
+ Opt.STRING, Opt.LINKED, Opt.MULTIVALUE, Opt.ALLOWMULTIID),
/*
STRUCTUREIMAGETYPE(Type.IMAGE,
"Set the structure image format for the preceding --structureimage. Valid values are:\n"