/*\r
- * This class was automatically generated with\r
+ * This class was automatically generated with \r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
*/\r
-package jalview.binding;\r
\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-\r
-import org.xml.sax.ContentHandler;\r
+package jalview.binding;\r
\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
+\r
import java.io.IOException;\r
import java.io.Reader;\r
import java.io.Serializable;\r
import java.io.Writer;\r
-\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
\r
/**\r
* Class Alignment.\r
- *\r
+ * \r
* @version $Revision$ $Date$\r
*/\r
-public class Alignment implements java.io.Serializable\r
-{\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
+public class Alignment implements java.io.Serializable {\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
//--------------------------/\r
\r
/**\r
*/\r
private jalview.binding.SequenceSet _sequenceSet;\r
\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
//----------------/\r
- //- Constructors -/\r
- //----------------/\r
- public Alignment()\r
- {\r
+\r
+ public Alignment() {\r
super();\r
- }\r
+ } //-- jalview.binding.Alignment()\r
\r
- //-- jalview.binding.Alignment()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
//-----------/\r
\r
/**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
+ * Returns the value of field 'annotation'.\r
+ * \r
+ * @return Annotation\r
+ * @return the value of field 'annotation'.\r
*/\r
public jalview.binding.Annotation getAnnotation()\r
{\r
return this._annotation;\r
- }\r
-\r
- //-- jalview.binding.Annotation getAnnotation() \r
+ } //-- jalview.binding.Annotation getAnnotation() \r
\r
/**\r
* Returns the value of field 'sequenceSet'.\r
- *\r
+ * \r
* @return SequenceSet\r
* @return the value of field 'sequenceSet'.\r
*/\r
public jalview.binding.SequenceSet getSequenceSet()\r
{\r
return this._sequenceSet;\r
- }\r
-\r
- //-- jalview.binding.SequenceSet getSequenceSet() \r
+ } //-- jalview.binding.SequenceSet getSequenceSet() \r
\r
/**\r
* Method isValid\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
public boolean isValid()\r
{\r
- try\r
- {\r
+ try {\r
validate();\r
}\r
- catch (org.exolab.castor.xml.ValidationException vex)\r
- {\r
+ catch (org.exolab.castor.xml.ValidationException vex) {\r
return false;\r
}\r
-\r
return true;\r
- }\r
-\r
- //-- boolean isValid() \r
+ } //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
+ \r
Marshaller.marshal(this, out);\r
- }\r
-\r
- //-- void marshal(java.io.Writer) \r
+ } //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
+ \r
Marshaller.marshal(this, handler);\r
- }\r
-\r
- //-- void marshal(org.xml.sax.ContentHandler) \r
+ } //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Sets the value of field 'annotation'.\r
- *\r
+ * \r
* @param annotation the value of field 'annotation'.\r
*/\r
public void setAnnotation(jalview.binding.Annotation annotation)\r
{\r
this._annotation = annotation;\r
- }\r
-\r
- //-- void setAnnotation(jalview.binding.Annotation) \r
+ } //-- void setAnnotation(jalview.binding.Annotation) \r
\r
/**\r
* Sets the value of field 'sequenceSet'.\r
- *\r
+ * \r
* @param sequenceSet the value of field 'sequenceSet'.\r
*/\r
public void setSequenceSet(jalview.binding.SequenceSet sequenceSet)\r
{\r
this._sequenceSet = sequenceSet;\r
- }\r
-\r
- //-- void setSequenceSet(jalview.binding.SequenceSet) \r
+ } //-- void setSequenceSet(jalview.binding.SequenceSet) \r
\r
/**\r
* Method unmarshal\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @param reader\r
* @return Object\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
- return (jalview.binding.Alignment) Unmarshaller.unmarshal(jalview.binding.Alignment.class,\r
- reader);\r
- }\r
-\r
- //-- java.lang.Object unmarshal(java.io.Reader) \r
+ return (jalview.binding.Alignment) Unmarshaller.unmarshal(jalview.binding.Alignment.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
- *\r
+ * \r
*/\r
- public void validate() throws org.exolab.castor.xml.ValidationException\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
{\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- }\r
+ } //-- void validate() \r
\r
- //-- void validate() \r
}\r