* Schema.\r
* $Id$\r
*/\r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
package jalview.binding;\r
\r
import org.exolab.castor.xml.MarshalException;\r
*\r
* @version $Revision$ $Date$\r
*/\r
-public class AnnotationElement implements java.io.Serializable {\r
+public class AnnotationElement implements java.io.Serializable\r
+{\r
//--------------------------/\r
//- Class/Member Variables -/\r
//--------------------------/\r
//----------------/\r
//- Constructors -/\r
//----------------/\r
- public AnnotationElement() {\r
+ public AnnotationElement()\r
+ {\r
super();\r
}\r
- //-- jalview.binding.AnnotationElement()\r
- //-----------/\r
\r
- public void deletePosition() {\r
+ //-- jalview.binding.AnnotationElement()\r
+ //-----------/\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void deletePosition()\r
+ {\r
this._has_position = false;\r
}\r
- //-- void deletePosition()\r
+\r
+ //-- void deletePosition() \r
\r
/**\r
* Method deleteValue\r
*\r
*/\r
- public void deleteValue() {\r
+ public void deleteValue()\r
+ {\r
this._has_value = false;\r
}\r
- //-- void deleteValue()\r
+\r
+ //-- void deleteValue() \r
\r
/**\r
* Returns the value of field 'description'.\r
* @return String\r
* @return the value of field 'description'.\r
*/\r
- public java.lang.String getDescription() {\r
+ public java.lang.String getDescription()\r
+ {\r
return this._description;\r
}\r
- //-- java.lang.String getDescription()\r
+\r
+ //-- java.lang.String getDescription() \r
\r
/**\r
* Returns the value of field 'displayCharacter'.\r
* @return String\r
* @return the value of field 'displayCharacter'.\r
*/\r
- public java.lang.String getDisplayCharacter() {\r
+ public java.lang.String getDisplayCharacter()\r
+ {\r
return this._displayCharacter;\r
}\r
- //-- java.lang.String getDisplayCharacter()\r
+\r
+ //-- java.lang.String getDisplayCharacter() \r
\r
/**\r
* Returns the value of field 'position'.\r
* @return int\r
* @return the value of field 'position'.\r
*/\r
- public int getPosition() {\r
+ public int getPosition()\r
+ {\r
return this._position;\r
}\r
- //-- int getPosition()\r
+\r
+ //-- int getPosition() \r
\r
/**\r
* Returns the value of field 'secondaryStructure'.\r
* @return String\r
* @return the value of field 'secondaryStructure'.\r
*/\r
- public java.lang.String getSecondaryStructure() {\r
+ public java.lang.String getSecondaryStructure()\r
+ {\r
return this._secondaryStructure;\r
}\r
- //-- java.lang.String getSecondaryStructure()\r
+\r
+ //-- java.lang.String getSecondaryStructure() \r
\r
/**\r
* Returns the value of field 'value'.\r
* @return float\r
* @return the value of field 'value'.\r
*/\r
- public float getValue() {\r
+ public float getValue()\r
+ {\r
return this._value;\r
}\r
- //-- float getValue()\r
+\r
+ //-- float getValue() \r
\r
/**\r
* Method hasPosition\r
*\r
* @return boolean\r
*/\r
- public boolean hasPosition() {\r
+ public boolean hasPosition()\r
+ {\r
return this._has_position;\r
}\r
- //-- boolean hasPosition()\r
+\r
+ //-- boolean hasPosition() \r
\r
/**\r
* Method hasValue\r
*\r
* @return boolean\r
*/\r
- public boolean hasValue() {\r
+ public boolean hasValue()\r
+ {\r
return this._has_value;\r
}\r
- //-- boolean hasValue()\r
+\r
+ //-- boolean hasValue() \r
\r
/**\r
* Method isValid\r
*\r
* @return boolean\r
*/\r
- public boolean isValid() {\r
- try {\r
+ public boolean isValid()\r
+ {\r
+ try\r
+ {\r
validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
return false;\r
}\r
\r
return true;\r
}\r
- //-- boolean isValid()\r
+\r
+ //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
*/\r
public void marshal(java.io.Writer out)\r
throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
Marshaller.marshal(this, out);\r
}\r
- //-- void marshal(java.io.Writer)\r
+\r
+ //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
Marshaller.marshal(this, handler);\r
}\r
- //-- void marshal(org.xml.sax.ContentHandler)\r
+\r
+ //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Sets the value of field 'description'.\r
*\r
* @param description the value of field 'description'.\r
*/\r
- public void setDescription(java.lang.String description) {\r
+ public void setDescription(java.lang.String description)\r
+ {\r
this._description = description;\r
}\r
- //-- void setDescription(java.lang.String)\r
+\r
+ //-- void setDescription(java.lang.String) \r
\r
/**\r
* Sets the value of field 'displayCharacter'.\r
*\r
* @param displayCharacter the value of field 'displayCharacter'\r
*/\r
- public void setDisplayCharacter(java.lang.String displayCharacter) {\r
+ public void setDisplayCharacter(java.lang.String displayCharacter)\r
+ {\r
this._displayCharacter = displayCharacter;\r
}\r
- //-- void setDisplayCharacter(java.lang.String)\r
+\r
+ //-- void setDisplayCharacter(java.lang.String) \r
\r
/**\r
* Sets the value of field 'position'.\r
*\r
* @param position the value of field 'position'.\r
*/\r
- public void setPosition(int position) {\r
+ public void setPosition(int position)\r
+ {\r
this._position = position;\r
this._has_position = true;\r
}\r
- //-- void setPosition(int)\r
+\r
+ //-- void setPosition(int) \r
\r
/**\r
* Sets the value of field 'secondaryStructure'.\r
* @param secondaryStructure the value of field\r
* 'secondaryStructure'.\r
*/\r
- public void setSecondaryStructure(java.lang.String secondaryStructure) {\r
+ public void setSecondaryStructure(java.lang.String secondaryStructure)\r
+ {\r
this._secondaryStructure = secondaryStructure;\r
}\r
- //-- void setSecondaryStructure(java.lang.String)\r
+\r
+ //-- void setSecondaryStructure(java.lang.String) \r
\r
/**\r
* Sets the value of field 'value'.\r
*\r
* @param value the value of field 'value'.\r
*/\r
- public void setValue(float value) {\r
+ public void setValue(float value)\r
+ {\r
this._value = value;\r
this._has_value = true;\r
}\r
- //-- void setValue(float)\r
+\r
+ //-- void setValue(float) \r
\r
/**\r
* Method unmarshal\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class,\r
reader);\r
}\r
- //-- java.lang.Object unmarshal(java.io.Reader)\r
+\r
+ //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
*\r
*/\r
- public void validate() throws org.exolab.castor.xml.ValidationException {\r
+ public void validate() throws org.exolab.castor.xml.ValidationException\r
+ {\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
}\r
- //-- void validate()\r
+\r
+ //-- void validate() \r
}\r
git://source.jalview.org / jalview.git / blobdiff