* Schema.\r
* $Id$\r
*/\r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
package jalview.binding;\r
\r
import org.exolab.castor.xml.MarshalException;\r
*\r
* @version $Revision$ $Date$\r
*/\r
-public class JSeq implements java.io.Serializable {\r
+public class JSeq implements java.io.Serializable\r
+{\r
//--------------------------/\r
//- Class/Member Variables -/\r
//--------------------------/\r
//----------------/\r
//- Constructors -/\r
//----------------/\r
- public JSeq() {\r
+ public JSeq()\r
+ {\r
super();\r
}\r
- //-- jalview.binding.JSeq()\r
- //-----------/\r
\r
- public void deleteColour() {\r
+ //-- jalview.binding.JSeq()\r
+ //-----------/\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void deleteColour()\r
+ {\r
this._has_colour = false;\r
}\r
- //-- void deleteColour()\r
+\r
+ //-- void deleteColour() \r
\r
/**\r
* Method deleteEnd\r
*\r
*/\r
- public void deleteEnd() {\r
+ public void deleteEnd()\r
+ {\r
this._has_end = false;\r
}\r
- //-- void deleteEnd()\r
+\r
+ //-- void deleteEnd() \r
\r
/**\r
* Method deleteId\r
*\r
*/\r
- public void deleteId() {\r
+ public void deleteId()\r
+ {\r
this._has_id = false;\r
}\r
- //-- void deleteId()\r
+\r
+ //-- void deleteId() \r
\r
/**\r
* Method deleteStart\r
*\r
*/\r
- public void deleteStart() {\r
+ public void deleteStart()\r
+ {\r
this._has_start = false;\r
}\r
- //-- void deleteStart()\r
+\r
+ //-- void deleteStart() \r
\r
/**\r
* Returns the value of field 'colour'.\r
* @return int\r
* @return the value of field 'colour'.\r
*/\r
- public int getColour() {\r
+ public int getColour()\r
+ {\r
return this._colour;\r
}\r
- //-- int getColour()\r
+\r
+ //-- int getColour() \r
\r
/**\r
* Returns the value of field 'end'.\r
* @return int\r
* @return the value of field 'end'.\r
*/\r
- public int getEnd() {\r
+ public int getEnd()\r
+ {\r
return this._end;\r
}\r
- //-- int getEnd()\r
+\r
+ //-- int getEnd() \r
\r
/**\r
* Returns the value of field 'id'.\r
* @return int\r
* @return the value of field 'id'.\r
*/\r
- public int getId() {\r
+ public int getId()\r
+ {\r
return this._id;\r
}\r
- //-- int getId()\r
+\r
+ //-- int getId() \r
\r
/**\r
* Returns the value of field 'start'.\r
* @return int\r
* @return the value of field 'start'.\r
*/\r
- public int getStart() {\r
+ public int getStart()\r
+ {\r
return this._start;\r
}\r
- //-- int getStart()\r
+\r
+ //-- int getStart() \r
\r
/**\r
* Method hasColour\r
*\r
* @return boolean\r
*/\r
- public boolean hasColour() {\r
+ public boolean hasColour()\r
+ {\r
return this._has_colour;\r
}\r
- //-- boolean hasColour()\r
+\r
+ //-- boolean hasColour() \r
\r
/**\r
* Method hasEnd\r
*\r
* @return boolean\r
*/\r
- public boolean hasEnd() {\r
+ public boolean hasEnd()\r
+ {\r
return this._has_end;\r
}\r
- //-- boolean hasEnd()\r
+\r
+ //-- boolean hasEnd() \r
\r
/**\r
* Method hasId\r
*\r
* @return boolean\r
*/\r
- public boolean hasId() {\r
+ public boolean hasId()\r
+ {\r
return this._has_id;\r
}\r
- //-- boolean hasId()\r
+\r
+ //-- boolean hasId() \r
\r
/**\r
* Method hasStart\r
*\r
* @return boolean\r
*/\r
- public boolean hasStart() {\r
+ public boolean hasStart()\r
+ {\r
return this._has_start;\r
}\r
- //-- boolean hasStart()\r
+\r
+ //-- boolean hasStart() \r
\r
/**\r
* Method isValid\r
*\r
* @return boolean\r
*/\r
- public boolean isValid() {\r
- try {\r
+ public boolean isValid()\r
+ {\r
+ try\r
+ {\r
validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
return false;\r
}\r
\r
return true;\r
}\r
- //-- boolean isValid()\r
+\r
+ //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
*/\r
public void marshal(java.io.Writer out)\r
throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
Marshaller.marshal(this, out);\r
}\r
- //-- void marshal(java.io.Writer)\r
+\r
+ //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
Marshaller.marshal(this, handler);\r
}\r
- //-- void marshal(org.xml.sax.ContentHandler)\r
+\r
+ //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Sets the value of field 'colour'.\r
*\r
* @param colour the value of field 'colour'.\r
*/\r
- public void setColour(int colour) {\r
+ public void setColour(int colour)\r
+ {\r
this._colour = colour;\r
this._has_colour = true;\r
}\r
- //-- void setColour(int)\r
+\r
+ //-- void setColour(int) \r
\r
/**\r
* Sets the value of field 'end'.\r
*\r
* @param end the value of field 'end'.\r
*/\r
- public void setEnd(int end) {\r
+ public void setEnd(int end)\r
+ {\r
this._end = end;\r
this._has_end = true;\r
}\r
- //-- void setEnd(int)\r
+\r
+ //-- void setEnd(int) \r
\r
/**\r
* Sets the value of field 'id'.\r
*\r
* @param id the value of field 'id'.\r
*/\r
- public void setId(int id) {\r
+ public void setId(int id)\r
+ {\r
this._id = id;\r
this._has_id = true;\r
}\r
- //-- void setId(int)\r
+\r
+ //-- void setId(int) \r
\r
/**\r
* Sets the value of field 'start'.\r
*\r
* @param start the value of field 'start'.\r
*/\r
- public void setStart(int start) {\r
+ public void setStart(int start)\r
+ {\r
this._start = start;\r
this._has_start = true;\r
}\r
- //-- void setStart(int)\r
+\r
+ //-- void setStart(int) \r
\r
/**\r
* Method unmarshal\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class,\r
reader);\r
}\r
- //-- java.lang.Object unmarshal(java.io.Reader)\r
+\r
+ //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
*\r
*/\r
- public void validate() throws org.exolab.castor.xml.ValidationException {\r
+ public void validate() throws org.exolab.castor.xml.ValidationException\r
+ {\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
}\r
- //-- void validate()\r
+\r
+ //-- void validate() \r
}\r
git://source.jalview.org / jalview.git / blobdiff