/*\r
- * This class was automatically generated with \r
+ * This class was automatically generated with\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
*/\r
-\r
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+*/\r
package jalview.binding;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
import org.exolab.castor.xml.MarshalException;\r
import org.exolab.castor.xml.Marshaller;\r
import org.exolab.castor.xml.Unmarshaller;\r
import org.exolab.castor.xml.ValidationException;\r
+\r
import org.xml.sax.ContentHandler;\r
\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+\r
+\r
/**\r
* Class JSeq.\r
- * \r
+ *\r
* @version $Revision$ $Date$\r
*/\r
public class JSeq implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
//--------------------------/\r
\r
/**\r
*/\r
private boolean _has_id;\r
\r
-\r
- //----------------/\r
- //- Constructors -/\r
//----------------/\r
-\r
+ //- Constructors -/\r
+ //----------------/\r
public JSeq() {\r
super();\r
- } //-- jalview.binding.JSeq()\r
+ }\r
+ //-- jalview.binding.JSeq()\r
+ //-----------/\r
\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method deleteColour\r
- * \r
- */\r
- public void deleteColour()\r
- {\r
- this._has_colour= false;\r
- } //-- void deleteColour() \r
+ public void deleteColour() {\r
+ this._has_colour = false;\r
+ }\r
+ //-- void deleteColour()\r
\r
/**\r
* Method deleteEnd\r
- * \r
+ *\r
*/\r
- public void deleteEnd()\r
- {\r
- this._has_end= false;\r
- } //-- void deleteEnd() \r
+ public void deleteEnd() {\r
+ this._has_end = false;\r
+ }\r
+ //-- void deleteEnd()\r
\r
/**\r
* Method deleteId\r
- * \r
+ *\r
*/\r
- public void deleteId()\r
- {\r
- this._has_id= false;\r
- } //-- void deleteId() \r
+ public void deleteId() {\r
+ this._has_id = false;\r
+ }\r
+ //-- void deleteId()\r
\r
/**\r
* Method deleteStart\r
- * \r
+ *\r
*/\r
- public void deleteStart()\r
- {\r
- this._has_start= false;\r
- } //-- void deleteStart() \r
+ public void deleteStart() {\r
+ this._has_start = false;\r
+ }\r
+ //-- void deleteStart()\r
\r
/**\r
* Returns the value of field 'colour'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'colour'.\r
*/\r
- public int getColour()\r
- {\r
+ public int getColour() {\r
return this._colour;\r
- } //-- int getColour() \r
+ }\r
+ //-- int getColour()\r
\r
/**\r
* Returns the value of field 'end'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'end'.\r
*/\r
- public int getEnd()\r
- {\r
+ public int getEnd() {\r
return this._end;\r
- } //-- int getEnd() \r
+ }\r
+ //-- int getEnd()\r
\r
/**\r
* Returns the value of field 'id'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'id'.\r
*/\r
- public int getId()\r
- {\r
+ public int getId() {\r
return this._id;\r
- } //-- int getId() \r
+ }\r
+ //-- int getId()\r
\r
/**\r
* Returns the value of field 'start'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'start'.\r
*/\r
- public int getStart()\r
- {\r
+ public int getStart() {\r
return this._start;\r
- } //-- int getStart() \r
+ }\r
+ //-- int getStart()\r
\r
/**\r
* Method hasColour\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
- public boolean hasColour()\r
- {\r
+ public boolean hasColour() {\r
return this._has_colour;\r
- } //-- boolean hasColour() \r
+ }\r
+ //-- boolean hasColour()\r
\r
/**\r
* Method hasEnd\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
- public boolean hasEnd()\r
- {\r
+ public boolean hasEnd() {\r
return this._has_end;\r
- } //-- boolean hasEnd() \r
+ }\r
+ //-- boolean hasEnd()\r
\r
/**\r
* Method hasId\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
- public boolean hasId()\r
- {\r
+ public boolean hasId() {\r
return this._has_id;\r
- } //-- boolean hasId() \r
+ }\r
+ //-- boolean hasId()\r
\r
/**\r
* Method hasStart\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
- public boolean hasStart()\r
- {\r
+ public boolean hasStart() {\r
return this._has_start;\r
- } //-- boolean hasStart() \r
+ }\r
+ //-- boolean hasStart()\r
\r
/**\r
* Method isValid\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
- public boolean isValid()\r
- {\r
+ public boolean isValid() {\r
try {\r
validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
+ } catch (org.exolab.castor.xml.ValidationException vex) {\r
return false;\r
}\r
+\r
return true;\r
- } //-- boolean isValid() \r
+ }\r
+ //-- boolean isValid()\r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
+ throws org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException {\r
Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
+ }\r
+ //-- void marshal(java.io.Writer)\r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException {\r
Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
+ }\r
+ //-- void marshal(org.xml.sax.ContentHandler)\r
\r
/**\r
* Sets the value of field 'colour'.\r
- * \r
+ *\r
* @param colour the value of field 'colour'.\r
*/\r
- public void setColour(int colour)\r
- {\r
+ public void setColour(int colour) {\r
this._colour = colour;\r
this._has_colour = true;\r
- } //-- void setColour(int) \r
+ }\r
+ //-- void setColour(int)\r
\r
/**\r
* Sets the value of field 'end'.\r
- * \r
+ *\r
* @param end the value of field 'end'.\r
*/\r
- public void setEnd(int end)\r
- {\r
+ public void setEnd(int end) {\r
this._end = end;\r
this._has_end = true;\r
- } //-- void setEnd(int) \r
+ }\r
+ //-- void setEnd(int)\r
\r
/**\r
* Sets the value of field 'id'.\r
- * \r
+ *\r
* @param id the value of field 'id'.\r
*/\r
- public void setId(int id)\r
- {\r
+ public void setId(int id) {\r
this._id = id;\r
this._has_id = true;\r
- } //-- void setId(int) \r
+ }\r
+ //-- void setId(int)\r
\r
/**\r
* Sets the value of field 'start'.\r
- * \r
+ *\r
* @param start the value of field 'start'.\r
*/\r
- public void setStart(int start)\r
- {\r
+ public void setStart(int start) {\r
this._start = start;\r
this._has_start = true;\r
- } //-- void setStart(int) \r
+ }\r
+ //-- void setStart(int)\r
\r
/**\r
* Method unmarshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param reader\r
* @return Object\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader) \r
+ throws org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException {\r
+ return (jalview.binding.JSeq) Unmarshaller.unmarshal(jalview.binding.JSeq.class,\r
+ reader);\r
+ }\r
+ //-- java.lang.Object unmarshal(java.io.Reader)\r
\r
/**\r
* Method validate\r
- * \r
+ *\r
*/\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
- {\r
+ public void validate() throws org.exolab.castor.xml.ValidationException {\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- } //-- void validate() \r
-\r
+ }\r
+ //-- void validate()\r
}\r
git://source.jalview.org / jalview.git / blobdiff