JAL-1683 replace year/version strings with tokens in source

[jalview.git] / src / jalview / binding / JalviewModelSequence.java

diff --git a/src/jalview/binding/JalviewModelSequence.java b/src/jalview/binding/JalviewModelSequence.java
old mode 100755 (executable)
new mode 100644 (file)
index f8207eb..43fa983
--- a/src/jalview/binding/JalviewModelSequence.java
+++ b/src/jalview/binding/JalviewModelSequence.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.binding;
 
@@ -21,6 +24,8 @@ package jalview.binding;
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -296,9 +301,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JGroupList.size())
     {
-      throw new IndexOutOfBoundsException("getJGroup: Index value '"
-              + index + "' not in range [0.."
-              + (this._JGroupList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getJGroup",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._JGroupList.size() - 1)).toString()
+        }));
     }
 
     return (jalview.binding.JGroup) _JGroupList.get(index);
@@ -343,8 +350,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JSeqList.size())
     {
-      throw new IndexOutOfBoundsException("getJSeq: Index value '" + index
-              + "' not in range [0.." + (this._JSeqList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "getJSeq",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._JSeqList.size() - 1)).toString()
+          }));
     }
 
     return (jalview.binding.JSeq) _JSeqList.get(index);
@@ -389,8 +399,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("getTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getJgetTreeSeq",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._treeList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.binding.Tree) _treeList.get(index);
@@ -435,9 +448,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._userColoursList.size())
     {
-      throw new IndexOutOfBoundsException("getUserColours: Index value '"
-              + index + "' not in range [0.."
-              + (this._userColoursList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "getUserColours",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._userColoursList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.binding.UserColours) _userColoursList.get(index);
@@ -483,9 +498,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._viewportList.size())
     {
-      throw new IndexOutOfBoundsException("getViewport: Index value '"
-              + index + "' not in range [0.."
-              + (this._viewportList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getViewport",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._viewportList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.binding.Viewport) _viewportList.get(index);
@@ -753,9 +770,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JGroupList.size())
     {
-      throw new IndexOutOfBoundsException("setJGroup: Index value '"
-              + index + "' not in range [0.."
-              + (this._JGroupList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setJGroup",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._JGroupList.size() - 1)).toString()
+          })); 
     }
 
     this._JGroupList.set(index, vJGroup);
@@ -791,8 +810,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JSeqList.size())
     {
-      throw new IndexOutOfBoundsException("setJSeq: Index value '" + index
-              + "' not in range [0.." + (this._JSeqList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "setJSeq",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._JSeqList.size() - 1)).toString()
+        })); 
     }
 
     this._JSeqList.set(index, vJSeq);
@@ -828,8 +850,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("setTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setTree",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._treeList.size() - 1)).toString()
+          })); 
     }
 
     this._treeList.set(index, vTree);
@@ -866,9 +891,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._userColoursList.size())
     {
-      throw new IndexOutOfBoundsException("setUserColours: Index value '"
-              + index + "' not in range [0.."
-              + (this._userColoursList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "setUserColours",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._userColoursList.size() - 1)).toString()
+        })); 
     }
 
     this._userColoursList.set(index, vUserColours);
@@ -906,9 +933,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._viewportList.size())
     {
-      throw new IndexOutOfBoundsException("setViewport: Index value '"
-              + index + "' not in range [0.."
-              + (this._viewportList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setViewport",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._viewportList.size() - 1)).toString()
+          })); 
     }
 
     this._viewportList.set(index, vViewport);