* Schema.\r
* $Id$\r
*/\r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
package jalview.binding;\r
\r
import org.exolab.castor.xml.MarshalException;\r
*\r
* @version $Revision$ $Date$\r
*/\r
-public class JalviewModelSequence2 implements java.io.Serializable {\r
+public class JalviewModelSequence2 implements java.io.Serializable\r
+{\r
//--------------------------/\r
//- Class/Member Variables -/\r
//--------------------------/\r
//----------------/\r
//- Constructors -/\r
//----------------/\r
- public JalviewModelSequence2() {\r
+ public JalviewModelSequence2()\r
+ {\r
super();\r
_items = new Vector();\r
}\r
- //-- jalview.binding.JalviewModelSequence2()\r
- //-----------/\r
\r
+ //-- jalview.binding.JalviewModelSequence2()\r
+ //-----------/\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param vJalviewModelSequence2Item DOCUMENT ME!\r
+ *\r
+ * @throws java.lang.IndexOutOfBoundsException DOCUMENT ME!\r
+ */\r
public void addJalviewModelSequence2Item(\r
jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)\r
- throws java.lang.IndexOutOfBoundsException {\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
_items.addElement(vJalviewModelSequence2Item);\r
}\r
- //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item)\r
+\r
+ //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) \r
\r
/**\r
* Method addJalviewModelSequence2Item\r
*/\r
public void addJalviewModelSequence2Item(int index,\r
jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)\r
- throws java.lang.IndexOutOfBoundsException {\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
_items.insertElementAt(vJalviewModelSequence2Item, index);\r
}\r
- //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item)\r
+\r
+ //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) \r
\r
/**\r
* Method enumerateJalviewModelSequence2Item\r
*\r
* @return Enumeration\r
*/\r
- public java.util.Enumeration enumerateJalviewModelSequence2Item() {\r
+ public java.util.Enumeration enumerateJalviewModelSequence2Item()\r
+ {\r
return _items.elements();\r
}\r
- //-- java.util.Enumeration enumerateJalviewModelSequence2Item()\r
+\r
+ //-- java.util.Enumeration enumerateJalviewModelSequence2Item() \r
\r
/**\r
* Method getJalviewModelSequence2Item\r
* @return JalviewModelSequence2Item\r
*/\r
public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(\r
- int index) throws java.lang.IndexOutOfBoundsException {\r
+ int index) throws java.lang.IndexOutOfBoundsException\r
+ {\r
//-- check bounds for index\r
- if ((index < 0) || (index > _items.size())) {\r
+ if ((index < 0) || (index > _items.size()))\r
+ {\r
throw new IndexOutOfBoundsException();\r
}\r
\r
return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);\r
}\r
- //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int)\r
+\r
+ //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int) \r
\r
/**\r
* Method getJalviewModelSequence2Item\r
*\r
* @return JalviewModelSequence2Item\r
*/\r
- public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() {\r
+ public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()\r
+ {\r
int size = _items.size();\r
jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];\r
\r
- for (int index = 0; index < size; index++) {\r
+ for (int index = 0; index < size; index++)\r
+ {\r
mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);\r
}\r
\r
return mArray;\r
}\r
- //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()\r
+\r
+ //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() \r
\r
/**\r
* Method getJalviewModelSequence2ItemCount\r
*\r
* @return int\r
*/\r
- public int getJalviewModelSequence2ItemCount() {\r
+ public int getJalviewModelSequence2ItemCount()\r
+ {\r
return _items.size();\r
}\r
- //-- int getJalviewModelSequence2ItemCount()\r
+\r
+ //-- int getJalviewModelSequence2ItemCount() \r
\r
/**\r
* Method isValid\r
*\r
* @return boolean\r
*/\r
- public boolean isValid() {\r
- try {\r
+ public boolean isValid()\r
+ {\r
+ try\r
+ {\r
validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
return false;\r
}\r
\r
return true;\r
}\r
- //-- boolean isValid()\r
+\r
+ //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
*/\r
public void marshal(java.io.Writer out)\r
throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
Marshaller.marshal(this, out);\r
}\r
- //-- void marshal(java.io.Writer)\r
+\r
+ //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
Marshaller.marshal(this, handler);\r
}\r
- //-- void marshal(org.xml.sax.ContentHandler)\r
+\r
+ //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Method removeAllJalviewModelSequence2Item\r
*\r
*/\r
- public void removeAllJalviewModelSequence2Item() {\r
+ public void removeAllJalviewModelSequence2Item()\r
+ {\r
_items.removeAllElements();\r
}\r
- //-- void removeAllJalviewModelSequence2Item()\r
+\r
+ //-- void removeAllJalviewModelSequence2Item() \r
\r
/**\r
* Method removeJalviewModelSequence2Item\r
* @return JalviewModelSequence2Item\r
*/\r
public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(\r
- int index) {\r
+ int index)\r
+ {\r
java.lang.Object obj = _items.elementAt(index);\r
_items.removeElementAt(index);\r
\r
return (jalview.binding.JalviewModelSequence2Item) obj;\r
}\r
- //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int)\r
+\r
+ //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int) \r
\r
/**\r
* Method setJalviewModelSequence2Item\r
*/\r
public void setJalviewModelSequence2Item(int index,\r
jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)\r
- throws java.lang.IndexOutOfBoundsException {\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
//-- check bounds for index\r
- if ((index < 0) || (index > _items.size())) {\r
+ if ((index < 0) || (index > _items.size()))\r
+ {\r
throw new IndexOutOfBoundsException();\r
}\r
\r
_items.setElementAt(vJalviewModelSequence2Item, index);\r
}\r
- //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item)\r
+\r
+ //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) \r
\r
/**\r
* Method setJalviewModelSequence2Item\r
* @param jalviewModelSequence2ItemArray\r
*/\r
public void setJalviewModelSequence2Item(\r
- jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray) {\r
+ jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)\r
+ {\r
//-- copy array\r
_items.removeAllElements();\r
\r
- for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++) {\r
+ for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++)\r
+ {\r
_items.addElement(jalviewModelSequence2ItemArray[i]);\r
}\r
}\r
- //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item)\r
+\r
+ //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) \r
\r
/**\r
* Method unmarshal\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class,\r
reader);\r
}\r
- //-- java.lang.Object unmarshal(java.io.Reader)\r
+\r
+ //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
*\r
*/\r
- public void validate() throws org.exolab.castor.xml.ValidationException {\r
+ public void validate() throws org.exolab.castor.xml.ValidationException\r
+ {\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
}\r
- //-- void validate()\r
+\r
+ //-- void validate() \r
}\r
git://source.jalview.org / jalview.git / blobdiff