renamed menu for jPred to Jnet.

[jalview.git] / src / jalview / binding / JalviewModelSequence2Item.java

diff --git a/src/jalview/binding/JalviewModelSequence2Item.java b/src/jalview/binding/JalviewModelSequence2Item.java
index dcd3ebc..8678b09 100755 (executable)
--- a/src/jalview/binding/JalviewModelSequence2Item.java
+++ b/src/jalview/binding/JalviewModelSequence2Item.java
@@ -1,29 +1,10 @@
 /*\r
- * This class was automatically generated with\r
+ * This class was automatically generated with \r
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
  * Schema.\r
  * $Id$\r
  */\r
 \r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
-*/\r
-\r
 package jalview.binding;\r
 \r
   //---------------------------------/\r
@@ -38,7 +19,7 @@ import org.exolab.castor.xml.Unmarshaller;
 \r
 /**\r
  * Class JalviewModelSequence2Item.\r
- *\r
+ * \r
  * @version $Revision$ $Date$\r
  */\r
 public class JalviewModelSequence2Item implements java.io.Serializable {\r
@@ -70,22 +51,22 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
 \r
     /**\r
      * Method addUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @param vUserColourScheme\r
      */\r
     public void addUserColourScheme(jalview.binding.UserColourScheme vUserColourScheme)\r
         throws java.lang.IndexOutOfBoundsException\r
     {\r
         _userColourSchemeList.addElement(vUserColourScheme);\r
-    } //-- void addUserColourScheme(jalview.binding.UserColourScheme)\r
+    } //-- void addUserColourScheme(jalview.binding.UserColourScheme) \r
 \r
     /**\r
      * Method addUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @param index\r
      * @param vUserColourScheme\r
      */\r
@@ -93,25 +74,25 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
         throws java.lang.IndexOutOfBoundsException\r
     {\r
         _userColourSchemeList.insertElementAt(vUserColourScheme, index);\r
-    } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)\r
+    } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme) \r
 \r
     /**\r
      * Method enumerateUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @return Enumeration\r
      */\r
     public java.util.Enumeration enumerateUserColourScheme()\r
     {\r
         return _userColourSchemeList.elements();\r
-    } //-- java.util.Enumeration enumerateUserColourScheme()\r
+    } //-- java.util.Enumeration enumerateUserColourScheme() \r
 \r
     /**\r
      * Method getUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @param index\r
      * @return UserColourScheme\r
      */\r
@@ -122,15 +103,15 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
         if ((index < 0) || (index > _userColourSchemeList.size())) {\r
             throw new IndexOutOfBoundsException();\r
         }\r
-\r
+        \r
         return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);\r
-    } //-- jalview.binding.UserColourScheme getUserColourScheme(int)\r
+    } //-- jalview.binding.UserColourScheme getUserColourScheme(int) \r
 \r
     /**\r
      * Method getUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @return UserColourScheme\r
      */\r
     public jalview.binding.UserColourScheme[] getUserColourScheme()\r
@@ -141,34 +122,34 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
             mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);\r
         }\r
         return mArray;\r
-    } //-- jalview.binding.UserColourScheme[] getUserColourScheme()\r
+    } //-- jalview.binding.UserColourScheme[] getUserColourScheme() \r
 \r
     /**\r
      * Method getUserColourSchemeCount\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @return int\r
      */\r
     public int getUserColourSchemeCount()\r
     {\r
         return _userColourSchemeList.size();\r
-    } //-- int getUserColourSchemeCount()\r
+    } //-- int getUserColourSchemeCount() \r
 \r
     /**\r
      * Method removeAllUserColourScheme\r
-     *\r
+     * \r
      */\r
     public void removeAllUserColourScheme()\r
     {\r
         _userColourSchemeList.removeAllElements();\r
-    } //-- void removeAllUserColourScheme()\r
+    } //-- void removeAllUserColourScheme() \r
 \r
     /**\r
      * Method removeUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @param index\r
      * @return UserColourScheme\r
      */\r
@@ -177,13 +158,13 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
         java.lang.Object obj = _userColourSchemeList.elementAt(index);\r
         _userColourSchemeList.removeElementAt(index);\r
         return (jalview.binding.UserColourScheme) obj;\r
-    } //-- jalview.binding.UserColourScheme removeUserColourScheme(int)\r
+    } //-- jalview.binding.UserColourScheme removeUserColourScheme(int) \r
 \r
     /**\r
      * Method setUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @param index\r
      * @param vUserColourScheme\r
      */\r
@@ -195,13 +176,13 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
             throw new IndexOutOfBoundsException();\r
         }\r
         _userColourSchemeList.setElementAt(vUserColourScheme, index);\r
-    } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)\r
+    } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme) \r
 \r
     /**\r
      * Method setUserColourScheme\r
-     *\r
-     *\r
-     *\r
+     * \r
+     * \r
+     * \r
      * @param userColourSchemeArray\r
      */\r
     public void setUserColourScheme(jalview.binding.UserColourScheme[] userColourSchemeArray)\r
@@ -211,6 +192,6 @@ public class JalviewModelSequence2Item implements java.io.Serializable {
         for (int i = 0; i < userColourSchemeArray.length; i++) {\r
             _userColourSchemeList.addElement(userColourSchemeArray[i]);\r
         }\r
-    } //-- void setUserColourScheme(jalview.binding.UserColourScheme)\r
+    } //-- void setUserColourScheme(jalview.binding.UserColourScheme) \r
 \r
 }\r