* Schema.\r
* $Id$\r
*/\r
+package jalview.binding;\r
\r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
\r
-package jalview.binding;\r
+import org.xml.sax.ContentHandler;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
//---------------------------------/\r
-\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
import java.io.IOException;\r
import java.io.Reader;\r
import java.io.Serializable;\r
import java.io.Writer;\r
+\r
import java.util.Enumeration;\r
import java.util.Vector;\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-import org.xml.sax.ContentHandler;\r
+\r
\r
/**\r
* Class JalviewUserColours.\r
*\r
* @version $Revision$ $Date$\r
*/\r
-public class JalviewUserColours implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
+public class JalviewUserColours implements java.io.Serializable\r
+{\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
//--------------------------/\r
\r
/**\r
*/\r
private java.util.Vector _colourList;\r
\r
-\r
- //----------------/\r
- //- Constructors -/\r
//----------------/\r
-\r
- public JalviewUserColours() {\r
+ //- Constructors -/\r
+ //----------------/\r
+ public JalviewUserColours()\r
+ {\r
super();\r
_colourList = new Vector();\r
- } //-- jalview.binding.JalviewUserColours()\r
-\r
+ }\r
\r
- //-----------/\r
- //- Methods -/\r
+ //-- jalview.binding.JalviewUserColours()\r
//-----------/\r
\r
/**\r
- * Method addColour\r
- *\r
+ * DOCUMENT ME!\r
*\r
+ * @param vColour DOCUMENT ME!\r
*\r
- * @param vColour\r
+ * @throws java.lang.IndexOutOfBoundsException DOCUMENT ME!\r
*/\r
public void addColour(jalview.binding.Colour vColour)\r
throws java.lang.IndexOutOfBoundsException\r
{\r
_colourList.addElement(vColour);\r
- } //-- void addColour(jalview.binding.Colour)\r
+ }\r
+\r
+ //-- void addColour(jalview.binding.Colour) \r
\r
/**\r
* Method addColour\r
throws java.lang.IndexOutOfBoundsException\r
{\r
_colourList.insertElementAt(vColour, index);\r
- } //-- void addColour(int, jalview.binding.Colour)\r
+ }\r
+\r
+ //-- void addColour(int, jalview.binding.Colour) \r
\r
/**\r
* Method enumerateColour\r
public java.util.Enumeration enumerateColour()\r
{\r
return _colourList.elements();\r
- } //-- java.util.Enumeration enumerateColour()\r
+ }\r
+\r
+ //-- java.util.Enumeration enumerateColour() \r
\r
/**\r
* Method getColour\r
throws java.lang.IndexOutOfBoundsException\r
{\r
//-- check bounds for index\r
- if ((index < 0) || (index > _colourList.size())) {\r
+ if ((index < 0) || (index > _colourList.size()))\r
+ {\r
throw new IndexOutOfBoundsException();\r
}\r
\r
return (jalview.binding.Colour) _colourList.elementAt(index);\r
- } //-- jalview.binding.Colour getColour(int)\r
+ }\r
+\r
+ //-- jalview.binding.Colour getColour(int) \r
\r
/**\r
* Method getColour\r
{\r
int size = _colourList.size();\r
jalview.binding.Colour[] mArray = new jalview.binding.Colour[size];\r
- for (int index = 0; index < size; index++) {\r
+\r
+ for (int index = 0; index < size; index++)\r
+ {\r
mArray[index] = (jalview.binding.Colour) _colourList.elementAt(index);\r
}\r
+\r
return mArray;\r
- } //-- jalview.binding.Colour[] getColour()\r
+ }\r
+\r
+ //-- jalview.binding.Colour[] getColour() \r
\r
/**\r
* Method getColourCount\r
public int getColourCount()\r
{\r
return _colourList.size();\r
- } //-- int getColourCount()\r
+ }\r
+\r
+ //-- int getColourCount() \r
\r
/**\r
* Method isValid\r
*/\r
public boolean isValid()\r
{\r
- try {\r
+ try\r
+ {\r
validate();\r
}\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
return false;\r
}\r
+\r
return true;\r
- } //-- boolean isValid()\r
+ }\r
+\r
+ //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ throws org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException\r
{\r
-\r
Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer)\r
+ }\r
+\r
+ //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException\r
{\r
-\r
Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler)\r
+ }\r
+\r
+ //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Method removeAllColour\r
public void removeAllColour()\r
{\r
_colourList.removeAllElements();\r
- } //-- void removeAllColour()\r
+ }\r
+\r
+ //-- void removeAllColour() \r
\r
/**\r
* Method removeColour\r
{\r
java.lang.Object obj = _colourList.elementAt(index);\r
_colourList.removeElementAt(index);\r
+\r
return (jalview.binding.Colour) obj;\r
- } //-- jalview.binding.Colour removeColour(int)\r
+ }\r
+\r
+ //-- jalview.binding.Colour removeColour(int) \r
\r
/**\r
* Method setColour\r
throws java.lang.IndexOutOfBoundsException\r
{\r
//-- check bounds for index\r
- if ((index < 0) || (index > _colourList.size())) {\r
+ if ((index < 0) || (index > _colourList.size()))\r
+ {\r
throw new IndexOutOfBoundsException();\r
}\r
+\r
_colourList.setElementAt(vColour, index);\r
- } //-- void setColour(int, jalview.binding.Colour)\r
+ }\r
+\r
+ //-- void setColour(int, jalview.binding.Colour) \r
\r
/**\r
* Method setColour\r
{\r
//-- copy array\r
_colourList.removeAllElements();\r
- for (int i = 0; i < colourArray.length; i++) {\r
+\r
+ for (int i = 0; i < colourArray.length; i++)\r
+ {\r
_colourList.addElement(colourArray[i]);\r
}\r
- } //-- void setColour(jalview.binding.Colour)\r
+ }\r
+\r
+ //-- void setColour(jalview.binding.Colour) \r
\r
/**\r
* Method unmarshal\r
* @return Object\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ throws org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException\r
{\r
- return (jalview.binding.JalviewUserColours) Unmarshaller.unmarshal(jalview.binding.JalviewUserColours.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader)\r
+ return (jalview.binding.JalviewUserColours) Unmarshaller.unmarshal(jalview.binding.JalviewUserColours.class,\r
+ reader);\r
+ }\r
+\r
+ //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
*\r
*/\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
+ public void validate() throws org.exolab.castor.xml.ValidationException\r
{\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- } //-- void validate()\r
+ }\r
\r
+ //-- void validate() \r
}\r
git://source.jalview.org / jalview.git / blobdiff