* Schema.\r
* $Id$\r
*/\r
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-package jalview.binding;\r
\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-\r
-import org.xml.sax.ContentHandler;\r
+package jalview.binding;\r
\r
//---------------------------------/\r
//- Imported classes and packages -/\r
//---------------------------------/\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
\r
+import org.exolab.castor.xml.*;\r
\r
/**\r
* Class Residue.\r
*\r
* @version $Revision$ $Date$\r
*/\r
-public class Residue implements java.io.Serializable {\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _name\r
- */\r
- private java.lang.String _name;\r
-\r
- /**\r
- * Field _RGB\r
- */\r
- private int _RGB;\r
-\r
- /**\r
- * keeps track of state for field: _RGB\r
- */\r
- private boolean _has_RGB;\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
- public Residue() {\r
- super();\r
- }\r
- //-- jalview.binding.Residue()\r
- //-----------/\r
-\r
- public void deleteRGB() {\r
- this._has_RGB = false;\r
- }\r
- //-- void deleteRGB()\r
-\r
- /**\r
- * Returns the value of field 'name'.\r
- *\r
- * @return String\r
- * @return the value of field 'name'.\r
- */\r
- public java.lang.String getName() {\r
- return this._name;\r
- }\r
- //-- java.lang.String getName()\r
-\r
- /**\r
- * Returns the value of field 'RGB'.\r
- *\r
- * @return int\r
- * @return the value of field 'RGB'.\r
- */\r
- public int getRGB() {\r
- return this._RGB;\r
+public class Residue\r
+ implements java.io.Serializable\r
+{\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _name\r
+ */\r
+ private java.lang.String _name;\r
+\r
+ /**\r
+ * Field _RGB\r
+ */\r
+ private int _RGB;\r
+\r
+ /**\r
+ * keeps track of state for field: _RGB\r
+ */\r
+ private boolean _has_RGB;\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public Residue()\r
+ {\r
+ super();\r
+ } //-- jalview.binding.Residue()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method deleteRGB\r
+ *\r
+ */\r
+ public void deleteRGB()\r
+ {\r
+ this._has_RGB = false;\r
+ } //-- void deleteRGB()\r
+\r
+ /**\r
+ * Returns the value of field 'name'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'name'.\r
+ */\r
+ public java.lang.String getName()\r
+ {\r
+ return this._name;\r
+ } //-- java.lang.String getName()\r
+\r
+ /**\r
+ * Returns the value of field 'RGB'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'RGB'.\r
+ */\r
+ public int getRGB()\r
+ {\r
+ return this._RGB;\r
+ } //-- int getRGB()\r
+\r
+ /**\r
+ * Method hasRGB\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasRGB()\r
+ {\r
+ return this._has_RGB;\r
+ } //-- boolean hasRGB()\r
+\r
+ /**\r
+ * Method isValid\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try\r
+ {\r
+ validate();\r
}\r
- //-- int getRGB()\r
-\r
- /**\r
- * Method hasRGB\r
- *\r
- *\r
- *\r
- * @return boolean\r
- */\r
- public boolean hasRGB() {\r
- return this._has_RGB;\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
+ return false;\r
}\r
- //-- boolean hasRGB()\r
-\r
- /**\r
- * Method isValid\r
- *\r
- *\r
- *\r
- * @return boolean\r
- */\r
- public boolean isValid() {\r
- try {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
-\r
- return true;\r
- }\r
- //-- boolean isValid()\r
-\r
- /**\r
- * Method marshal\r
- *\r
- *\r
- *\r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, out);\r
- }\r
- //-- void marshal(java.io.Writer)\r
-\r
- /**\r
- * Method marshal\r
- *\r
- *\r
- *\r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, handler);\r
- }\r
- //-- void marshal(org.xml.sax.ContentHandler)\r
-\r
- /**\r
- * Sets the value of field 'name'.\r
- *\r
- * @param name the value of field 'name'.\r
- */\r
- public void setName(java.lang.String name) {\r
- this._name = name;\r
- }\r
- //-- void setName(java.lang.String)\r
-\r
- /**\r
- * Sets the value of field 'RGB'.\r
- *\r
- * @param RGB the value of field 'RGB'.\r
- */\r
- public void setRGB(int RGB) {\r
- this._RGB = RGB;\r
- this._has_RGB = true;\r
- }\r
- //-- void setRGB(int)\r
-\r
- /**\r
- * Method unmarshal\r
- *\r
- *\r
- *\r
- * @param reader\r
- * @return Object\r
- */\r
- public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
- return (jalview.binding.Residue) Unmarshaller.unmarshal(jalview.binding.Residue.class,\r
- reader);\r
- }\r
- //-- java.lang.Object unmarshal(java.io.Reader)\r
-\r
- /**\r
- * Method validate\r
- *\r
- */\r
- public void validate() throws org.exolab.castor.xml.ValidationException {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
- //-- void validate()\r
+ return true;\r
+ } //-- boolean isValid()\r
+\r
+ /**\r
+ * Method marshal\r
+ *\r
+ *\r
+ *\r
+ * @param out\r
+ */\r
+ public void marshal(java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+\r
+ Marshaller.marshal(this, out);\r
+ } //-- void marshal(java.io.Writer)\r
+\r
+ /**\r
+ * Method marshal\r
+ *\r
+ *\r
+ *\r
+ * @param handler\r
+ */\r
+ public void marshal(org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+\r
+ Marshaller.marshal(this, handler);\r
+ } //-- void marshal(org.xml.sax.ContentHandler)\r
+\r
+ /**\r
+ * Sets the value of field 'name'.\r
+ *\r
+ * @param name the value of field 'name'.\r
+ */\r
+ public void setName(java.lang.String name)\r
+ {\r
+ this._name = name;\r
+ } //-- void setName(java.lang.String)\r
+\r
+ /**\r
+ * Sets the value of field 'RGB'.\r
+ *\r
+ * @param RGB the value of field 'RGB'.\r
+ */\r
+ public void setRGB(int RGB)\r
+ {\r
+ this._RGB = RGB;\r
+ this._has_RGB = true;\r
+ } //-- void setRGB(int)\r
+\r
+ /**\r
+ * Method unmarshal\r
+ *\r
+ *\r
+ *\r
+ * @param reader\r
+ * @return Object\r
+ */\r
+ public static java.lang.Object unmarshal(java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+ return (jalview.binding.Residue) Unmarshaller.unmarshal(jalview.binding.\r
+ Residue.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader)\r
+\r
+ /**\r
+ * Method validate\r
+ *\r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.\r
+ Validator();\r
+ validator.validate(this);\r
+ } //-- void validate()\r
+\r
}\r
git://source.jalview.org / jalview.git / blobdiff