JAL-2418 source formatting

[jalview.git] / src / jalview / binding / SequenceSet.java

diff --git a/src/jalview/binding/SequenceSet.java b/src/jalview/binding/SequenceSet.java
index 05da739..3d81bae 100644 (file)
--- a/src/jalview/binding/SequenceSet.java
+++ b/src/jalview/binding/SequenceSet.java
@@ -1,31 +1,16 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
-import jalview.util.MessageManager;
-
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -188,11 +173,9 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._annotationList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getAnnotation",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._annotationList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException(
+              "getAnnotation: Index value '" + index + "' not in range [0.."
+                      + (this._annotationList.size() - 1) + "]");
     }
 
     return (jalview.binding.Annotation) _annotationList.get(index);
@@ -248,11 +231,9 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "getSequence",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._sequenceList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException(
+              "getSequence: Index value '" + index + "' not in range [0.."
+                      + (this._sequenceList.size() - 1) + "]");
     }
 
     return (jalview.binding.Sequence) _sequenceList.get(index);
@@ -447,11 +428,9 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._annotationList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "setAnnotation",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._annotationList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException(
+              "setAnnotation: Index value '" + index + "' not in range [0.."
+                      + (this._annotationList.size() - 1) + "]");
     }
 
     this._annotationList.set(index, vAnnotation);
@@ -500,11 +479,9 @@ public class SequenceSet implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "setSequence",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._sequenceList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException(
+              "setSequence: Index value '" + index + "' not in range [0.."
+                      + (this._sequenceList.size() - 1) + "]");
     }
 
     this._sequenceList.set(index, vSequence);
@@ -542,8 +519,8 @@ public class SequenceSet implements java.io.Serializable
           throws org.exolab.castor.xml.MarshalException,
           org.exolab.castor.xml.ValidationException
   {
-    return (jalview.binding.SequenceSet) Unmarshaller.unmarshal(
-            jalview.binding.SequenceSet.class, reader);
+    return (jalview.binding.SequenceSet) Unmarshaller
+            .unmarshal(jalview.binding.SequenceSet.class, reader);
   }
 
   /**