/*\r
- * This class was automatically generated with \r
+ * This class was automatically generated with\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
*/\r
-\r
package jalview.binding;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
import org.exolab.castor.xml.MarshalException;\r
import org.exolab.castor.xml.Marshaller;\r
import org.exolab.castor.xml.Unmarshaller;\r
import org.exolab.castor.xml.ValidationException;\r
+\r
import org.xml.sax.ContentHandler;\r
\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+\r
+\r
/**\r
* Class Tree.\r
- * \r
+ *\r
* @version $Revision$ $Date$\r
*/\r
-public class Tree implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
+public class Tree implements java.io.Serializable\r
+{\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
//--------------------------/\r
\r
/**\r
*/\r
private java.lang.String _newick;\r
\r
-\r
- //----------------/\r
- //- Constructors -/\r
//----------------/\r
-\r
- public Tree() {\r
+ //- Constructors -/\r
+ //----------------/\r
+ public Tree()\r
+ {\r
super();\r
- } //-- jalview.binding.Tree()\r
+ }\r
\r
-\r
- //-----------/\r
- //- Methods -/\r
+ //-- jalview.binding.Tree()\r
//-----------/\r
\r
/**\r
- * Method deleteCurrentTree\r
- * \r
+ * DOCUMENT ME!\r
*/\r
public void deleteCurrentTree()\r
{\r
- this._has_currentTree= false;\r
- } //-- void deleteCurrentTree() \r
+ this._has_currentTree = false;\r
+ }\r
+\r
+ //-- void deleteCurrentTree() \r
\r
/**\r
* Method deleteFitToWindow\r
- * \r
+ *\r
*/\r
public void deleteFitToWindow()\r
{\r
- this._has_fitToWindow= false;\r
- } //-- void deleteFitToWindow() \r
+ this._has_fitToWindow = false;\r
+ }\r
+\r
+ //-- void deleteFitToWindow() \r
\r
/**\r
* Method deleteFontSize\r
- * \r
+ *\r
*/\r
public void deleteFontSize()\r
{\r
- this._has_fontSize= false;\r
- } //-- void deleteFontSize() \r
+ this._has_fontSize = false;\r
+ }\r
+\r
+ //-- void deleteFontSize() \r
\r
/**\r
* Method deleteHeight\r
- * \r
+ *\r
*/\r
public void deleteHeight()\r
{\r
- this._has_height= false;\r
- } //-- void deleteHeight() \r
+ this._has_height = false;\r
+ }\r
+\r
+ //-- void deleteHeight() \r
\r
/**\r
* Method deleteMarkUnlinked\r
- * \r
+ *\r
*/\r
public void deleteMarkUnlinked()\r
{\r
- this._has_markUnlinked= false;\r
- } //-- void deleteMarkUnlinked() \r
+ this._has_markUnlinked = false;\r
+ }\r
+\r
+ //-- void deleteMarkUnlinked() \r
\r
/**\r
* Method deleteShowBootstrap\r
- * \r
+ *\r
*/\r
public void deleteShowBootstrap()\r
{\r
- this._has_showBootstrap= false;\r
- } //-- void deleteShowBootstrap() \r
+ this._has_showBootstrap = false;\r
+ }\r
+\r
+ //-- void deleteShowBootstrap() \r
\r
/**\r
* Method deleteShowDistances\r
- * \r
+ *\r
*/\r
public void deleteShowDistances()\r
{\r
- this._has_showDistances= false;\r
- } //-- void deleteShowDistances() \r
+ this._has_showDistances = false;\r
+ }\r
+\r
+ //-- void deleteShowDistances() \r
\r
/**\r
* Method deleteThreshold\r
- * \r
+ *\r
*/\r
public void deleteThreshold()\r
{\r
- this._has_threshold= false;\r
- } //-- void deleteThreshold() \r
+ this._has_threshold = false;\r
+ }\r
+\r
+ //-- void deleteThreshold() \r
\r
/**\r
* Method deleteWidth\r
- * \r
+ *\r
*/\r
public void deleteWidth()\r
{\r
- this._has_width= false;\r
- } //-- void deleteWidth() \r
+ this._has_width = false;\r
+ }\r
+\r
+ //-- void deleteWidth() \r
\r
/**\r
* Method deleteXpos\r
- * \r
+ *\r
*/\r
public void deleteXpos()\r
{\r
- this._has_xpos= false;\r
- } //-- void deleteXpos() \r
+ this._has_xpos = false;\r
+ }\r
+\r
+ //-- void deleteXpos() \r
\r
/**\r
* Method deleteYpos\r
- * \r
+ *\r
*/\r
public void deleteYpos()\r
{\r
- this._has_ypos= false;\r
- } //-- void deleteYpos() \r
+ this._has_ypos = false;\r
+ }\r
+\r
+ //-- void deleteYpos() \r
\r
/**\r
* Returns the value of field 'currentTree'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'currentTree'.\r
*/\r
public boolean getCurrentTree()\r
{\r
return this._currentTree;\r
- } //-- boolean getCurrentTree() \r
+ }\r
+\r
+ //-- boolean getCurrentTree() \r
\r
/**\r
* Returns the value of field 'fitToWindow'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'fitToWindow'.\r
*/\r
public boolean getFitToWindow()\r
{\r
return this._fitToWindow;\r
- } //-- boolean getFitToWindow() \r
+ }\r
+\r
+ //-- boolean getFitToWindow() \r
\r
/**\r
* Returns the value of field 'fontSize'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'fontSize'.\r
*/\r
public int getFontSize()\r
{\r
return this._fontSize;\r
- } //-- int getFontSize() \r
+ }\r
+\r
+ //-- int getFontSize() \r
\r
/**\r
* Returns the value of field 'height'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'height'.\r
*/\r
public int getHeight()\r
{\r
return this._height;\r
- } //-- int getHeight() \r
+ }\r
+\r
+ //-- int getHeight() \r
\r
/**\r
* Returns the value of field 'markUnlinked'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'markUnlinked'.\r
*/\r
public boolean getMarkUnlinked()\r
{\r
return this._markUnlinked;\r
- } //-- boolean getMarkUnlinked() \r
+ }\r
+\r
+ //-- boolean getMarkUnlinked() \r
\r
/**\r
* Returns the value of field 'newick'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'newick'.\r
*/\r
public java.lang.String getNewick()\r
{\r
return this._newick;\r
- } //-- java.lang.String getNewick() \r
+ }\r
+\r
+ //-- java.lang.String getNewick() \r
\r
/**\r
* Returns the value of field 'showBootstrap'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showBootstrap'.\r
*/\r
public boolean getShowBootstrap()\r
{\r
return this._showBootstrap;\r
- } //-- boolean getShowBootstrap() \r
+ }\r
+\r
+ //-- boolean getShowBootstrap() \r
\r
/**\r
* Returns the value of field 'showDistances'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showDistances'.\r
*/\r
public boolean getShowDistances()\r
{\r
return this._showDistances;\r
- } //-- boolean getShowDistances() \r
+ }\r
+\r
+ //-- boolean getShowDistances() \r
\r
/**\r
* Returns the value of field 'threshold'.\r
- * \r
+ *\r
* @return float\r
* @return the value of field 'threshold'.\r
*/\r
public float getThreshold()\r
{\r
return this._threshold;\r
- } //-- float getThreshold() \r
+ }\r
+\r
+ //-- float getThreshold() \r
\r
/**\r
* Returns the value of field 'title'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'title'.\r
*/\r
public java.lang.String getTitle()\r
{\r
return this._title;\r
- } //-- java.lang.String getTitle() \r
+ }\r
+\r
+ //-- java.lang.String getTitle() \r
\r
/**\r
* Returns the value of field 'width'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'width'.\r
*/\r
public int getWidth()\r
{\r
return this._width;\r
- } //-- int getWidth() \r
+ }\r
+\r
+ //-- int getWidth() \r
\r
/**\r
* Returns the value of field 'xpos'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'xpos'.\r
*/\r
public int getXpos()\r
{\r
return this._xpos;\r
- } //-- int getXpos() \r
+ }\r
+\r
+ //-- int getXpos() \r
\r
/**\r
* Returns the value of field 'ypos'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'ypos'.\r
*/\r
public int getYpos()\r
{\r
return this._ypos;\r
- } //-- int getYpos() \r
+ }\r
+\r
+ //-- int getYpos() \r
\r
/**\r
* Method hasCurrentTree\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasCurrentTree()\r
{\r
return this._has_currentTree;\r
- } //-- boolean hasCurrentTree() \r
+ }\r
+\r
+ //-- boolean hasCurrentTree() \r
\r
/**\r
* Method hasFitToWindow\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasFitToWindow()\r
{\r
return this._has_fitToWindow;\r
- } //-- boolean hasFitToWindow() \r
+ }\r
+\r
+ //-- boolean hasFitToWindow() \r
\r
/**\r
* Method hasFontSize\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasFontSize()\r
{\r
return this._has_fontSize;\r
- } //-- boolean hasFontSize() \r
+ }\r
+\r
+ //-- boolean hasFontSize() \r
\r
/**\r
* Method hasHeight\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasHeight()\r
{\r
return this._has_height;\r
- } //-- boolean hasHeight() \r
+ }\r
+\r
+ //-- boolean hasHeight() \r
\r
/**\r
* Method hasMarkUnlinked\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasMarkUnlinked()\r
{\r
return this._has_markUnlinked;\r
- } //-- boolean hasMarkUnlinked() \r
+ }\r
+\r
+ //-- boolean hasMarkUnlinked() \r
\r
/**\r
* Method hasShowBootstrap\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowBootstrap()\r
{\r
return this._has_showBootstrap;\r
- } //-- boolean hasShowBootstrap() \r
+ }\r
+\r
+ //-- boolean hasShowBootstrap() \r
\r
/**\r
* Method hasShowDistances\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowDistances()\r
{\r
return this._has_showDistances;\r
- } //-- boolean hasShowDistances() \r
+ }\r
+\r
+ //-- boolean hasShowDistances() \r
\r
/**\r
* Method hasThreshold\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasThreshold()\r
{\r
return this._has_threshold;\r
- } //-- boolean hasThreshold() \r
+ }\r
+\r
+ //-- boolean hasThreshold() \r
\r
/**\r
* Method hasWidth\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasWidth()\r
{\r
return this._has_width;\r
- } //-- boolean hasWidth() \r
+ }\r
+\r
+ //-- boolean hasWidth() \r
\r
/**\r
* Method hasXpos\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasXpos()\r
{\r
return this._has_xpos;\r
- } //-- boolean hasXpos() \r
+ }\r
+\r
+ //-- boolean hasXpos() \r
\r
/**\r
* Method hasYpos\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasYpos()\r
{\r
return this._has_ypos;\r
- } //-- boolean hasYpos() \r
+ }\r
+\r
+ //-- boolean hasYpos() \r
\r
/**\r
* Method isValid\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean isValid()\r
{\r
- try {\r
+ try\r
+ {\r
validate();\r
}\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
return false;\r
}\r
+\r
return true;\r
- } //-- boolean isValid() \r
+ }\r
+\r
+ //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ throws org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException\r
{\r
- \r
Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
+ }\r
+\r
+ //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException\r
{\r
- \r
Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
+ }\r
+\r
+ //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Sets the value of field 'currentTree'.\r
- * \r
+ *\r
* @param currentTree the value of field 'currentTree'.\r
*/\r
public void setCurrentTree(boolean currentTree)\r
{\r
this._currentTree = currentTree;\r
this._has_currentTree = true;\r
- } //-- void setCurrentTree(boolean) \r
+ }\r
+\r
+ //-- void setCurrentTree(boolean) \r
\r
/**\r
* Sets the value of field 'fitToWindow'.\r
- * \r
+ *\r
* @param fitToWindow the value of field 'fitToWindow'.\r
*/\r
public void setFitToWindow(boolean fitToWindow)\r
{\r
this._fitToWindow = fitToWindow;\r
this._has_fitToWindow = true;\r
- } //-- void setFitToWindow(boolean) \r
+ }\r
+\r
+ //-- void setFitToWindow(boolean) \r
\r
/**\r
* Sets the value of field 'fontSize'.\r
- * \r
+ *\r
* @param fontSize the value of field 'fontSize'.\r
*/\r
public void setFontSize(int fontSize)\r
{\r
this._fontSize = fontSize;\r
this._has_fontSize = true;\r
- } //-- void setFontSize(int) \r
+ }\r
+\r
+ //-- void setFontSize(int) \r
\r
/**\r
* Sets the value of field 'height'.\r
- * \r
+ *\r
* @param height the value of field 'height'.\r
*/\r
public void setHeight(int height)\r
{\r
this._height = height;\r
this._has_height = true;\r
- } //-- void setHeight(int) \r
+ }\r
+\r
+ //-- void setHeight(int) \r
\r
/**\r
* Sets the value of field 'markUnlinked'.\r
- * \r
+ *\r
* @param markUnlinked the value of field 'markUnlinked'.\r
*/\r
public void setMarkUnlinked(boolean markUnlinked)\r
{\r
this._markUnlinked = markUnlinked;\r
this._has_markUnlinked = true;\r
- } //-- void setMarkUnlinked(boolean) \r
+ }\r
+\r
+ //-- void setMarkUnlinked(boolean) \r
\r
/**\r
* Sets the value of field 'newick'.\r
- * \r
+ *\r
* @param newick the value of field 'newick'.\r
*/\r
public void setNewick(java.lang.String newick)\r
{\r
this._newick = newick;\r
- } //-- void setNewick(java.lang.String) \r
+ }\r
+\r
+ //-- void setNewick(java.lang.String) \r
\r
/**\r
* Sets the value of field 'showBootstrap'.\r
- * \r
+ *\r
* @param showBootstrap the value of field 'showBootstrap'.\r
*/\r
public void setShowBootstrap(boolean showBootstrap)\r
{\r
this._showBootstrap = showBootstrap;\r
this._has_showBootstrap = true;\r
- } //-- void setShowBootstrap(boolean) \r
+ }\r
+\r
+ //-- void setShowBootstrap(boolean) \r
\r
/**\r
* Sets the value of field 'showDistances'.\r
- * \r
+ *\r
* @param showDistances the value of field 'showDistances'.\r
*/\r
public void setShowDistances(boolean showDistances)\r
{\r
this._showDistances = showDistances;\r
this._has_showDistances = true;\r
- } //-- void setShowDistances(boolean) \r
+ }\r
+\r
+ //-- void setShowDistances(boolean) \r
\r
/**\r
* Sets the value of field 'threshold'.\r
- * \r
+ *\r
* @param threshold the value of field 'threshold'.\r
*/\r
public void setThreshold(float threshold)\r
{\r
this._threshold = threshold;\r
this._has_threshold = true;\r
- } //-- void setThreshold(float) \r
+ }\r
+\r
+ //-- void setThreshold(float) \r
\r
/**\r
* Sets the value of field 'title'.\r
- * \r
+ *\r
* @param title the value of field 'title'.\r
*/\r
public void setTitle(java.lang.String title)\r
{\r
this._title = title;\r
- } //-- void setTitle(java.lang.String) \r
+ }\r
+\r
+ //-- void setTitle(java.lang.String) \r
\r
/**\r
* Sets the value of field 'width'.\r
- * \r
+ *\r
* @param width the value of field 'width'.\r
*/\r
public void setWidth(int width)\r
{\r
this._width = width;\r
this._has_width = true;\r
- } //-- void setWidth(int) \r
+ }\r
+\r
+ //-- void setWidth(int) \r
\r
/**\r
* Sets the value of field 'xpos'.\r
- * \r
+ *\r
* @param xpos the value of field 'xpos'.\r
*/\r
public void setXpos(int xpos)\r
{\r
this._xpos = xpos;\r
this._has_xpos = true;\r
- } //-- void setXpos(int) \r
+ }\r
+\r
+ //-- void setXpos(int) \r
\r
/**\r
* Sets the value of field 'ypos'.\r
- * \r
+ *\r
* @param ypos the value of field 'ypos'.\r
*/\r
public void setYpos(int ypos)\r
{\r
this._ypos = ypos;\r
this._has_ypos = true;\r
- } //-- void setYpos(int) \r
+ }\r
+\r
+ //-- void setYpos(int) \r
\r
/**\r
* Method unmarshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param reader\r
* @return Object\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ throws org.exolab.castor.xml.MarshalException, \r
+ org.exolab.castor.xml.ValidationException\r
{\r
- return (jalview.binding.Tree) Unmarshaller.unmarshal(jalview.binding.Tree.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader) \r
+ return (jalview.binding.Tree) Unmarshaller.unmarshal(jalview.binding.Tree.class,\r
+ reader);\r
+ }\r
+\r
+ //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
- * \r
+ *\r
*/\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
+ public void validate() throws org.exolab.castor.xml.ValidationException\r
{\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- } //-- void validate() \r
+ }\r
\r
+ //-- void validate() \r
}\r
git://source.jalview.org / jalview.git / blobdiff