/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
*/
+
package jalview.binding;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
-import jalview.util.MessageManager;
-
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
* @throws java.lang.IndexOutOfBoundsException
* if the index given is outside the bounds of the collection
*/
- public void addSequenceSet(final int index, final SequenceSet vSequenceSet)
+ public void addSequenceSet(final int index,
+ final SequenceSet vSequenceSet)
throws java.lang.IndexOutOfBoundsException
{
this._sequenceSetList.add(index, vSequenceSet);
// check bounds for index
if (index < 0 || index >= this._alignmentList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getAlignment",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alignmentList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "getAlignment: Index value '" + index + "' not in range [0.."
+ + (this._alignmentList.size() - 1) + "]");
}
return (Alignment) _alignmentList.get(index);
// check bounds for index
if (index < 0 || index >= this._sequenceSetList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getSequenceSet",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getSequenceSet: Index value '"
+ + index + "' not in range [0.."
+ + (this._sequenceSetList.size() - 1) + "]");
}
return (SequenceSet) _sequenceSetList.get(index);
// check bounds for index
if (index < 0 || index >= this._treeList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getTree",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._treeList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("getTree: Index value '" + index
+ + "' not in range [0.." + (this._treeList.size() - 1) + "]");
}
return (java.lang.String) _treeList.get(index);
// check bounds for index
if (index < 0 || index >= this._alignmentList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setAlignment",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._alignmentList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException(
+ "setAlignment: Index value '" + index + "' not in range [0.."
+ + (this._alignmentList.size() - 1) + "]");
}
this._alignmentList.set(index, vAlignment);
* @throws java.lang.IndexOutOfBoundsException
* if the index given is outside the bounds of the collection
*/
- public void setSequenceSet(final int index, final SequenceSet vSequenceSet)
+ public void setSequenceSet(final int index,
+ final SequenceSet vSequenceSet)
throws java.lang.IndexOutOfBoundsException
{
// check bounds for index
if (index < 0 || index >= this._sequenceSetList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setSequenceSet",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setSequenceSet: Index value '"
+ + index + "' not in range [0.."
+ + (this._sequenceSetList.size() - 1) + "]");
}
this._sequenceSetList.set(index, vSequenceSet);
// check bounds for index
if (index < 0 || index >= this._treeList.size())
{
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setTree",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._treeList.size() - 1)).toString()
- }));
+ throw new IndexOutOfBoundsException("setTree: Index value '" + index
+ + "' not in range [0.." + (this._treeList.size() - 1) + "]");
}
this._treeList.set(index, vTree);
* if this object is an invalid instance according to the schema
* @return the unmarshaled jalview.binding.VAMSAS
*/
- public static jalview.binding.VAMSAS unmarshal(final java.io.Reader reader)
+ public static jalview.binding.VAMSAS unmarshal(
+ final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException
{
- return (jalview.binding.VAMSAS) Unmarshaller.unmarshal(
- jalview.binding.VAMSAS.class, reader);
+ return (jalview.binding.VAMSAS) Unmarshaller
+ .unmarshal(jalview.binding.VAMSAS.class, reader);
}
/**