/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-/*\r
- * This class was automatically generated with\r
+ * This class was automatically generated with \r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
*/\r
-package jalview.binding;\r
-\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
\r
-import org.xml.sax.ContentHandler;\r
+package jalview.binding;\r
\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
+\r
import java.io.IOException;\r
import java.io.Reader;\r
import java.io.Serializable;\r
import java.io.Writer;\r
-\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
\r
/**\r
* Class Viewport.\r
- *\r
+ * \r
* @version $Revision$ $Date$\r
*/\r
public class Viewport implements java.io.Serializable {\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
//--------------------------/\r
\r
/**\r
*/\r
private boolean _has_fontStyle;\r
\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
//----------------/\r
- //- Constructors -/\r
- //----------------/\r
+\r
public Viewport() {\r
super();\r
- }\r
- //-- jalview.binding.Viewport()\r
- //-----------/\r
+ } //-- jalview.binding.Viewport()\r
\r
- public void deleteConsThreshold() {\r
- this._has_consThreshold = false;\r
- }\r
- //-- void deleteConsThreshold()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method deleteConsThreshold\r
+ * \r
+ */\r
+ public void deleteConsThreshold()\r
+ {\r
+ this._has_consThreshold= false;\r
+ } //-- void deleteConsThreshold() \r
\r
/**\r
* Method deleteConservationSelected\r
- *\r
+ * \r
*/\r
- public void deleteConservationSelected() {\r
- this._has_conservationSelected = false;\r
- }\r
- //-- void deleteConservationSelected()\r
+ public void deleteConservationSelected()\r
+ {\r
+ this._has_conservationSelected= false;\r
+ } //-- void deleteConservationSelected() \r
\r
/**\r
* Method deleteFontSize\r
- *\r
+ * \r
*/\r
- public void deleteFontSize() {\r
- this._has_fontSize = false;\r
- }\r
- //-- void deleteFontSize()\r
+ public void deleteFontSize()\r
+ {\r
+ this._has_fontSize= false;\r
+ } //-- void deleteFontSize() \r
\r
/**\r
* Method deleteFontStyle\r
- *\r
+ * \r
*/\r
- public void deleteFontStyle() {\r
- this._has_fontStyle = false;\r
- }\r
- //-- void deleteFontStyle()\r
+ public void deleteFontStyle()\r
+ {\r
+ this._has_fontStyle= false;\r
+ } //-- void deleteFontStyle() \r
\r
/**\r
* Method deleteHeight\r
- *\r
+ * \r
*/\r
- public void deleteHeight() {\r
- this._has_height = false;\r
- }\r
- //-- void deleteHeight()\r
+ public void deleteHeight()\r
+ {\r
+ this._has_height= false;\r
+ } //-- void deleteHeight() \r
\r
/**\r
* Method deletePidSelected\r
- *\r
+ * \r
*/\r
- public void deletePidSelected() {\r
- this._has_pidSelected = false;\r
- }\r
- //-- void deletePidSelected()\r
+ public void deletePidSelected()\r
+ {\r
+ this._has_pidSelected= false;\r
+ } //-- void deletePidSelected() \r
\r
/**\r
* Method deletePidThreshold\r
- *\r
+ * \r
*/\r
- public void deletePidThreshold() {\r
- this._has_pidThreshold = false;\r
- }\r
- //-- void deletePidThreshold()\r
+ public void deletePidThreshold()\r
+ {\r
+ this._has_pidThreshold= false;\r
+ } //-- void deletePidThreshold() \r
\r
/**\r
* Method deleteRenderGaps\r
- *\r
+ * \r
*/\r
- public void deleteRenderGaps() {\r
- this._has_renderGaps = false;\r
- }\r
- //-- void deleteRenderGaps()\r
+ public void deleteRenderGaps()\r
+ {\r
+ this._has_renderGaps= false;\r
+ } //-- void deleteRenderGaps() \r
\r
/**\r
* Method deleteShowAnnotation\r
- *\r
+ * \r
*/\r
- public void deleteShowAnnotation() {\r
- this._has_showAnnotation = false;\r
- }\r
- //-- void deleteShowAnnotation()\r
+ public void deleteShowAnnotation()\r
+ {\r
+ this._has_showAnnotation= false;\r
+ } //-- void deleteShowAnnotation() \r
\r
/**\r
* Method deleteShowBoxes\r
- *\r
+ * \r
*/\r
- public void deleteShowBoxes() {\r
- this._has_showBoxes = false;\r
- }\r
- //-- void deleteShowBoxes()\r
+ public void deleteShowBoxes()\r
+ {\r
+ this._has_showBoxes= false;\r
+ } //-- void deleteShowBoxes() \r
\r
/**\r
* Method deleteShowColourText\r
- *\r
+ * \r
*/\r
- public void deleteShowColourText() {\r
- this._has_showColourText = false;\r
- }\r
- //-- void deleteShowColourText()\r
+ public void deleteShowColourText()\r
+ {\r
+ this._has_showColourText= false;\r
+ } //-- void deleteShowColourText() \r
\r
/**\r
* Method deleteShowConservation\r
- *\r
+ * \r
*/\r
- public void deleteShowConservation() {\r
- this._has_showConservation = false;\r
- }\r
- //-- void deleteShowConservation()\r
+ public void deleteShowConservation()\r
+ {\r
+ this._has_showConservation= false;\r
+ } //-- void deleteShowConservation() \r
\r
/**\r
* Method deleteShowFullId\r
- *\r
+ * \r
*/\r
- public void deleteShowFullId() {\r
- this._has_showFullId = false;\r
- }\r
- //-- void deleteShowFullId()\r
+ public void deleteShowFullId()\r
+ {\r
+ this._has_showFullId= false;\r
+ } //-- void deleteShowFullId() \r
\r
/**\r
* Method deleteShowIdentity\r
- *\r
+ * \r
*/\r
- public void deleteShowIdentity() {\r
- this._has_showIdentity = false;\r
- }\r
- //-- void deleteShowIdentity()\r
+ public void deleteShowIdentity()\r
+ {\r
+ this._has_showIdentity= false;\r
+ } //-- void deleteShowIdentity() \r
\r
/**\r
* Method deleteShowQuality\r
- *\r
+ * \r
*/\r
- public void deleteShowQuality() {\r
- this._has_showQuality = false;\r
- }\r
- //-- void deleteShowQuality()\r
+ public void deleteShowQuality()\r
+ {\r
+ this._has_showQuality= false;\r
+ } //-- void deleteShowQuality() \r
\r
/**\r
* Method deleteShowSequenceFeatures\r
- *\r
+ * \r
*/\r
- public void deleteShowSequenceFeatures() {\r
- this._has_showSequenceFeatures = false;\r
- }\r
- //-- void deleteShowSequenceFeatures()\r
+ public void deleteShowSequenceFeatures()\r
+ {\r
+ this._has_showSequenceFeatures= false;\r
+ } //-- void deleteShowSequenceFeatures() \r
\r
/**\r
* Method deleteShowText\r
- *\r
+ * \r
*/\r
- public void deleteShowText() {\r
- this._has_showText = false;\r
- }\r
- //-- void deleteShowText()\r
+ public void deleteShowText()\r
+ {\r
+ this._has_showText= false;\r
+ } //-- void deleteShowText() \r
\r
/**\r
* Method deleteStartRes\r
- *\r
+ * \r
*/\r
- public void deleteStartRes() {\r
- this._has_startRes = false;\r
- }\r
- //-- void deleteStartRes()\r
+ public void deleteStartRes()\r
+ {\r
+ this._has_startRes= false;\r
+ } //-- void deleteStartRes() \r
\r
/**\r
* Method deleteStartSeq\r
- *\r
+ * \r
*/\r
- public void deleteStartSeq() {\r
- this._has_startSeq = false;\r
- }\r
- //-- void deleteStartSeq()\r
+ public void deleteStartSeq()\r
+ {\r
+ this._has_startSeq= false;\r
+ } //-- void deleteStartSeq() \r
\r
/**\r
* Method deleteWidth\r
- *\r
+ * \r
*/\r
- public void deleteWidth() {\r
- this._has_width = false;\r
- }\r
- //-- void deleteWidth()\r
+ public void deleteWidth()\r
+ {\r
+ this._has_width= false;\r
+ } //-- void deleteWidth() \r
\r
/**\r
* Method deleteWrapAlignment\r
- *\r
+ * \r
*/\r
- public void deleteWrapAlignment() {\r
- this._has_wrapAlignment = false;\r
- }\r
- //-- void deleteWrapAlignment()\r
+ public void deleteWrapAlignment()\r
+ {\r
+ this._has_wrapAlignment= false;\r
+ } //-- void deleteWrapAlignment() \r
\r
/**\r
* Method deleteXpos\r
- *\r
+ * \r
*/\r
- public void deleteXpos() {\r
- this._has_xpos = false;\r
- }\r
- //-- void deleteXpos()\r
+ public void deleteXpos()\r
+ {\r
+ this._has_xpos= false;\r
+ } //-- void deleteXpos() \r
\r
/**\r
* Method deleteYpos\r
- *\r
+ * \r
*/\r
- public void deleteYpos() {\r
- this._has_ypos = false;\r
- }\r
- //-- void deleteYpos()\r
+ public void deleteYpos()\r
+ {\r
+ this._has_ypos= false;\r
+ } //-- void deleteYpos() \r
\r
/**\r
* Returns the value of field 'bgColour'.\r
- *\r
+ * \r
* @return String\r
* @return the value of field 'bgColour'.\r
*/\r
- public java.lang.String getBgColour() {\r
+ public java.lang.String getBgColour()\r
+ {\r
return this._bgColour;\r
- }\r
- //-- java.lang.String getBgColour()\r
+ } //-- java.lang.String getBgColour() \r
\r
/**\r
* Returns the value of field 'consThreshold'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'consThreshold'.\r
*/\r
- public int getConsThreshold() {\r
+ public int getConsThreshold()\r
+ {\r
return this._consThreshold;\r
- }\r
- //-- int getConsThreshold()\r
+ } //-- int getConsThreshold() \r
\r
/**\r
* Returns the value of field 'conservationSelected'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'conservationSelected'.\r
*/\r
- public boolean getConservationSelected() {\r
+ public boolean getConservationSelected()\r
+ {\r
return this._conservationSelected;\r
- }\r
- //-- boolean getConservationSelected()\r
+ } //-- boolean getConservationSelected() \r
\r
/**\r
* Returns the value of field 'fontName'.\r
- *\r
+ * \r
* @return String\r
* @return the value of field 'fontName'.\r
*/\r
- public java.lang.String getFontName() {\r
+ public java.lang.String getFontName()\r
+ {\r
return this._fontName;\r
- }\r
- //-- java.lang.String getFontName()\r
+ } //-- java.lang.String getFontName() \r
\r
/**\r
* Returns the value of field 'fontSize'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'fontSize'.\r
*/\r
- public int getFontSize() {\r
+ public int getFontSize()\r
+ {\r
return this._fontSize;\r
- }\r
- //-- int getFontSize()\r
+ } //-- int getFontSize() \r
\r
/**\r
* Returns the value of field 'fontStyle'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'fontStyle'.\r
*/\r
- public int getFontStyle() {\r
+ public int getFontStyle()\r
+ {\r
return this._fontStyle;\r
- }\r
- //-- int getFontStyle()\r
+ } //-- int getFontStyle() \r
\r
/**\r
* Returns the value of field 'height'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'height'.\r
*/\r
- public int getHeight() {\r
+ public int getHeight()\r
+ {\r
return this._height;\r
- }\r
- //-- int getHeight()\r
+ } //-- int getHeight() \r
\r
/**\r
* Returns the value of field 'pidSelected'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'pidSelected'.\r
*/\r
- public boolean getPidSelected() {\r
+ public boolean getPidSelected()\r
+ {\r
return this._pidSelected;\r
- }\r
- //-- boolean getPidSelected()\r
+ } //-- boolean getPidSelected() \r
\r
/**\r
* Returns the value of field 'pidThreshold'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'pidThreshold'.\r
*/\r
- public int getPidThreshold() {\r
+ public int getPidThreshold()\r
+ {\r
return this._pidThreshold;\r
- }\r
- //-- int getPidThreshold()\r
+ } //-- int getPidThreshold() \r
\r
/**\r
* Returns the value of field 'renderGaps'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'renderGaps'.\r
*/\r
- public boolean getRenderGaps() {\r
+ public boolean getRenderGaps()\r
+ {\r
return this._renderGaps;\r
- }\r
- //-- boolean getRenderGaps()\r
+ } //-- boolean getRenderGaps() \r
\r
/**\r
* Returns the value of field 'showAnnotation'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showAnnotation'.\r
*/\r
- public boolean getShowAnnotation() {\r
+ public boolean getShowAnnotation()\r
+ {\r
return this._showAnnotation;\r
- }\r
- //-- boolean getShowAnnotation()\r
+ } //-- boolean getShowAnnotation() \r
\r
/**\r
* Returns the value of field 'showBoxes'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showBoxes'.\r
*/\r
- public boolean getShowBoxes() {\r
+ public boolean getShowBoxes()\r
+ {\r
return this._showBoxes;\r
- }\r
- //-- boolean getShowBoxes()\r
+ } //-- boolean getShowBoxes() \r
\r
/**\r
* Returns the value of field 'showColourText'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showColourText'.\r
*/\r
- public boolean getShowColourText() {\r
+ public boolean getShowColourText()\r
+ {\r
return this._showColourText;\r
- }\r
- //-- boolean getShowColourText()\r
+ } //-- boolean getShowColourText() \r
\r
/**\r
* Returns the value of field 'showConservation'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showConservation'.\r
*/\r
- public boolean getShowConservation() {\r
+ public boolean getShowConservation()\r
+ {\r
return this._showConservation;\r
- }\r
- //-- boolean getShowConservation()\r
+ } //-- boolean getShowConservation() \r
\r
/**\r
* Returns the value of field 'showFullId'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showFullId'.\r
*/\r
- public boolean getShowFullId() {\r
+ public boolean getShowFullId()\r
+ {\r
return this._showFullId;\r
- }\r
- //-- boolean getShowFullId()\r
+ } //-- boolean getShowFullId() \r
\r
/**\r
* Returns the value of field 'showIdentity'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showIdentity'.\r
*/\r
- public boolean getShowIdentity() {\r
+ public boolean getShowIdentity()\r
+ {\r
return this._showIdentity;\r
- }\r
- //-- boolean getShowIdentity()\r
+ } //-- boolean getShowIdentity() \r
\r
/**\r
* Returns the value of field 'showQuality'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showQuality'.\r
*/\r
- public boolean getShowQuality() {\r
+ public boolean getShowQuality()\r
+ {\r
return this._showQuality;\r
- }\r
- //-- boolean getShowQuality()\r
+ } //-- boolean getShowQuality() \r
\r
/**\r
* Returns the value of field 'showSequenceFeatures'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showSequenceFeatures'.\r
*/\r
- public boolean getShowSequenceFeatures() {\r
+ public boolean getShowSequenceFeatures()\r
+ {\r
return this._showSequenceFeatures;\r
- }\r
- //-- boolean getShowSequenceFeatures()\r
+ } //-- boolean getShowSequenceFeatures() \r
\r
/**\r
* Returns the value of field 'showText'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'showText'.\r
*/\r
- public boolean getShowText() {\r
+ public boolean getShowText()\r
+ {\r
return this._showText;\r
- }\r
- //-- boolean getShowText()\r
+ } //-- boolean getShowText() \r
\r
/**\r
* Returns the value of field 'startRes'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'startRes'.\r
*/\r
- public int getStartRes() {\r
+ public int getStartRes()\r
+ {\r
return this._startRes;\r
- }\r
- //-- int getStartRes()\r
+ } //-- int getStartRes() \r
\r
/**\r
* Returns the value of field 'startSeq'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'startSeq'.\r
*/\r
- public int getStartSeq() {\r
+ public int getStartSeq()\r
+ {\r
return this._startSeq;\r
- }\r
- //-- int getStartSeq()\r
+ } //-- int getStartSeq() \r
\r
/**\r
* Returns the value of field 'title'.\r
- *\r
+ * \r
* @return String\r
* @return the value of field 'title'.\r
*/\r
- public java.lang.String getTitle() {\r
+ public java.lang.String getTitle()\r
+ {\r
return this._title;\r
- }\r
- //-- java.lang.String getTitle()\r
+ } //-- java.lang.String getTitle() \r
\r
/**\r
* Returns the value of field 'width'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'width'.\r
*/\r
- public int getWidth() {\r
+ public int getWidth()\r
+ {\r
return this._width;\r
- }\r
- //-- int getWidth()\r
+ } //-- int getWidth() \r
\r
/**\r
* Returns the value of field 'wrapAlignment'.\r
- *\r
+ * \r
* @return boolean\r
* @return the value of field 'wrapAlignment'.\r
*/\r
- public boolean getWrapAlignment() {\r
+ public boolean getWrapAlignment()\r
+ {\r
return this._wrapAlignment;\r
- }\r
- //-- boolean getWrapAlignment()\r
+ } //-- boolean getWrapAlignment() \r
\r
/**\r
* Returns the value of field 'xpos'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'xpos'.\r
*/\r
- public int getXpos() {\r
+ public int getXpos()\r
+ {\r
return this._xpos;\r
- }\r
- //-- int getXpos()\r
+ } //-- int getXpos() \r
\r
/**\r
* Returns the value of field 'ypos'.\r
- *\r
+ * \r
* @return int\r
* @return the value of field 'ypos'.\r
*/\r
- public int getYpos() {\r
+ public int getYpos()\r
+ {\r
return this._ypos;\r
- }\r
- //-- int getYpos()\r
+ } //-- int getYpos() \r
\r
/**\r
* Method hasConsThreshold\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasConsThreshold() {\r
+ public boolean hasConsThreshold()\r
+ {\r
return this._has_consThreshold;\r
- }\r
- //-- boolean hasConsThreshold()\r
+ } //-- boolean hasConsThreshold() \r
\r
/**\r
* Method hasConservationSelected\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasConservationSelected() {\r
+ public boolean hasConservationSelected()\r
+ {\r
return this._has_conservationSelected;\r
- }\r
- //-- boolean hasConservationSelected()\r
+ } //-- boolean hasConservationSelected() \r
\r
/**\r
* Method hasFontSize\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasFontSize() {\r
+ public boolean hasFontSize()\r
+ {\r
return this._has_fontSize;\r
- }\r
- //-- boolean hasFontSize()\r
+ } //-- boolean hasFontSize() \r
\r
/**\r
* Method hasFontStyle\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasFontStyle() {\r
+ public boolean hasFontStyle()\r
+ {\r
return this._has_fontStyle;\r
- }\r
- //-- boolean hasFontStyle()\r
+ } //-- boolean hasFontStyle() \r
\r
/**\r
* Method hasHeight\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasHeight() {\r
+ public boolean hasHeight()\r
+ {\r
return this._has_height;\r
- }\r
- //-- boolean hasHeight()\r
+ } //-- boolean hasHeight() \r
\r
/**\r
* Method hasPidSelected\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasPidSelected() {\r
+ public boolean hasPidSelected()\r
+ {\r
return this._has_pidSelected;\r
- }\r
- //-- boolean hasPidSelected()\r
+ } //-- boolean hasPidSelected() \r
\r
/**\r
* Method hasPidThreshold\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasPidThreshold() {\r
+ public boolean hasPidThreshold()\r
+ {\r
return this._has_pidThreshold;\r
- }\r
- //-- boolean hasPidThreshold()\r
+ } //-- boolean hasPidThreshold() \r
\r
/**\r
* Method hasRenderGaps\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasRenderGaps() {\r
+ public boolean hasRenderGaps()\r
+ {\r
return this._has_renderGaps;\r
- }\r
- //-- boolean hasRenderGaps()\r
+ } //-- boolean hasRenderGaps() \r
\r
/**\r
* Method hasShowAnnotation\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowAnnotation() {\r
+ public boolean hasShowAnnotation()\r
+ {\r
return this._has_showAnnotation;\r
- }\r
- //-- boolean hasShowAnnotation()\r
+ } //-- boolean hasShowAnnotation() \r
\r
/**\r
* Method hasShowBoxes\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowBoxes() {\r
+ public boolean hasShowBoxes()\r
+ {\r
return this._has_showBoxes;\r
- }\r
- //-- boolean hasShowBoxes()\r
+ } //-- boolean hasShowBoxes() \r
\r
/**\r
* Method hasShowColourText\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowColourText() {\r
+ public boolean hasShowColourText()\r
+ {\r
return this._has_showColourText;\r
- }\r
- //-- boolean hasShowColourText()\r
+ } //-- boolean hasShowColourText() \r
\r
/**\r
* Method hasShowConservation\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowConservation() {\r
+ public boolean hasShowConservation()\r
+ {\r
return this._has_showConservation;\r
- }\r
- //-- boolean hasShowConservation()\r
+ } //-- boolean hasShowConservation() \r
\r
/**\r
* Method hasShowFullId\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowFullId() {\r
+ public boolean hasShowFullId()\r
+ {\r
return this._has_showFullId;\r
- }\r
- //-- boolean hasShowFullId()\r
+ } //-- boolean hasShowFullId() \r
\r
/**\r
* Method hasShowIdentity\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowIdentity() {\r
+ public boolean hasShowIdentity()\r
+ {\r
return this._has_showIdentity;\r
- }\r
- //-- boolean hasShowIdentity()\r
+ } //-- boolean hasShowIdentity() \r
\r
/**\r
* Method hasShowQuality\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowQuality() {\r
+ public boolean hasShowQuality()\r
+ {\r
return this._has_showQuality;\r
- }\r
- //-- boolean hasShowQuality()\r
+ } //-- boolean hasShowQuality() \r
\r
/**\r
* Method hasShowSequenceFeatures\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowSequenceFeatures() {\r
+ public boolean hasShowSequenceFeatures()\r
+ {\r
return this._has_showSequenceFeatures;\r
- }\r
- //-- boolean hasShowSequenceFeatures()\r
+ } //-- boolean hasShowSequenceFeatures() \r
\r
/**\r
* Method hasShowText\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasShowText() {\r
+ public boolean hasShowText()\r
+ {\r
return this._has_showText;\r
- }\r
- //-- boolean hasShowText()\r
+ } //-- boolean hasShowText() \r
\r
/**\r
* Method hasStartRes\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasStartRes() {\r
+ public boolean hasStartRes()\r
+ {\r
return this._has_startRes;\r
- }\r
- //-- boolean hasStartRes()\r
+ } //-- boolean hasStartRes() \r
\r
/**\r
* Method hasStartSeq\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasStartSeq() {\r
+ public boolean hasStartSeq()\r
+ {\r
return this._has_startSeq;\r
- }\r
- //-- boolean hasStartSeq()\r
+ } //-- boolean hasStartSeq() \r
\r
/**\r
* Method hasWidth\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasWidth() {\r
+ public boolean hasWidth()\r
+ {\r
return this._has_width;\r
- }\r
- //-- boolean hasWidth()\r
+ } //-- boolean hasWidth() \r
\r
/**\r
* Method hasWrapAlignment\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasWrapAlignment() {\r
+ public boolean hasWrapAlignment()\r
+ {\r
return this._has_wrapAlignment;\r
- }\r
- //-- boolean hasWrapAlignment()\r
+ } //-- boolean hasWrapAlignment() \r
\r
/**\r
* Method hasXpos\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasXpos() {\r
+ public boolean hasXpos()\r
+ {\r
return this._has_xpos;\r
- }\r
- //-- boolean hasXpos()\r
+ } //-- boolean hasXpos() \r
\r
/**\r
* Method hasYpos\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean hasYpos() {\r
+ public boolean hasYpos()\r
+ {\r
return this._has_ypos;\r
- }\r
- //-- boolean hasYpos()\r
+ } //-- boolean hasYpos() \r
\r
/**\r
* Method isValid\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @return boolean\r
*/\r
- public boolean isValid() {\r
+ public boolean isValid()\r
+ {\r
try {\r
validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex) {\r
return false;\r
}\r
-\r
return true;\r
- }\r
- //-- boolean isValid()\r
+ } //-- boolean isValid() \r
\r
/**\r
* Method marshal\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
Marshaller.marshal(this, out);\r
- }\r
- //-- void marshal(java.io.Writer)\r
+ } //-- void marshal(java.io.Writer) \r
\r
/**\r
* Method marshal\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
Marshaller.marshal(this, handler);\r
- }\r
- //-- void marshal(org.xml.sax.ContentHandler)\r
+ } //-- void marshal(org.xml.sax.ContentHandler) \r
\r
/**\r
* Sets the value of field 'bgColour'.\r
- *\r
+ * \r
* @param bgColour the value of field 'bgColour'.\r
*/\r
- public void setBgColour(java.lang.String bgColour) {\r
+ public void setBgColour(java.lang.String bgColour)\r
+ {\r
this._bgColour = bgColour;\r
- }\r
- //-- void setBgColour(java.lang.String)\r
+ } //-- void setBgColour(java.lang.String) \r
\r
/**\r
* Sets the value of field 'consThreshold'.\r
- *\r
+ * \r
* @param consThreshold the value of field 'consThreshold'.\r
*/\r
- public void setConsThreshold(int consThreshold) {\r
+ public void setConsThreshold(int consThreshold)\r
+ {\r
this._consThreshold = consThreshold;\r
this._has_consThreshold = true;\r
- }\r
- //-- void setConsThreshold(int)\r
+ } //-- void setConsThreshold(int) \r
\r
/**\r
* Sets the value of field 'conservationSelected'.\r
- *\r
+ * \r
* @param conservationSelected the value of field\r
* 'conservationSelected'.\r
*/\r
- public void setConservationSelected(boolean conservationSelected) {\r
+ public void setConservationSelected(boolean conservationSelected)\r
+ {\r
this._conservationSelected = conservationSelected;\r
this._has_conservationSelected = true;\r
- }\r
- //-- void setConservationSelected(boolean)\r
+ } //-- void setConservationSelected(boolean) \r
\r
/**\r
* Sets the value of field 'fontName'.\r
- *\r
+ * \r
* @param fontName the value of field 'fontName'.\r
*/\r
- public void setFontName(java.lang.String fontName) {\r
+ public void setFontName(java.lang.String fontName)\r
+ {\r
this._fontName = fontName;\r
- }\r
- //-- void setFontName(java.lang.String)\r
+ } //-- void setFontName(java.lang.String) \r
\r
/**\r
* Sets the value of field 'fontSize'.\r
- *\r
+ * \r
* @param fontSize the value of field 'fontSize'.\r
*/\r
- public void setFontSize(int fontSize) {\r
+ public void setFontSize(int fontSize)\r
+ {\r
this._fontSize = fontSize;\r
this._has_fontSize = true;\r
- }\r
- //-- void setFontSize(int)\r
+ } //-- void setFontSize(int) \r
\r
/**\r
* Sets the value of field 'fontStyle'.\r
- *\r
+ * \r
* @param fontStyle the value of field 'fontStyle'.\r
*/\r
- public void setFontStyle(int fontStyle) {\r
+ public void setFontStyle(int fontStyle)\r
+ {\r
this._fontStyle = fontStyle;\r
this._has_fontStyle = true;\r
- }\r
- //-- void setFontStyle(int)\r
+ } //-- void setFontStyle(int) \r
\r
/**\r
* Sets the value of field 'height'.\r
- *\r
+ * \r
* @param height the value of field 'height'.\r
*/\r
- public void setHeight(int height) {\r
+ public void setHeight(int height)\r
+ {\r
this._height = height;\r
this._has_height = true;\r
- }\r
- //-- void setHeight(int)\r
+ } //-- void setHeight(int) \r
\r
/**\r
* Sets the value of field 'pidSelected'.\r
- *\r
+ * \r
* @param pidSelected the value of field 'pidSelected'.\r
*/\r
- public void setPidSelected(boolean pidSelected) {\r
+ public void setPidSelected(boolean pidSelected)\r
+ {\r
this._pidSelected = pidSelected;\r
this._has_pidSelected = true;\r
- }\r
- //-- void setPidSelected(boolean)\r
+ } //-- void setPidSelected(boolean) \r
\r
/**\r
* Sets the value of field 'pidThreshold'.\r
- *\r
+ * \r
* @param pidThreshold the value of field 'pidThreshold'.\r
*/\r
- public void setPidThreshold(int pidThreshold) {\r
+ public void setPidThreshold(int pidThreshold)\r
+ {\r
this._pidThreshold = pidThreshold;\r
this._has_pidThreshold = true;\r
- }\r
- //-- void setPidThreshold(int)\r
+ } //-- void setPidThreshold(int) \r
\r
/**\r
* Sets the value of field 'renderGaps'.\r
- *\r
+ * \r
* @param renderGaps the value of field 'renderGaps'.\r
*/\r
- public void setRenderGaps(boolean renderGaps) {\r
+ public void setRenderGaps(boolean renderGaps)\r
+ {\r
this._renderGaps = renderGaps;\r
this._has_renderGaps = true;\r
- }\r
- //-- void setRenderGaps(boolean)\r
+ } //-- void setRenderGaps(boolean) \r
\r
/**\r
* Sets the value of field 'showAnnotation'.\r
- *\r
+ * \r
* @param showAnnotation the value of field 'showAnnotation'.\r
*/\r
- public void setShowAnnotation(boolean showAnnotation) {\r
+ public void setShowAnnotation(boolean showAnnotation)\r
+ {\r
this._showAnnotation = showAnnotation;\r
this._has_showAnnotation = true;\r
- }\r
- //-- void setShowAnnotation(boolean)\r
+ } //-- void setShowAnnotation(boolean) \r
\r
/**\r
* Sets the value of field 'showBoxes'.\r
- *\r
+ * \r
* @param showBoxes the value of field 'showBoxes'.\r
*/\r
- public void setShowBoxes(boolean showBoxes) {\r
+ public void setShowBoxes(boolean showBoxes)\r
+ {\r
this._showBoxes = showBoxes;\r
this._has_showBoxes = true;\r
- }\r
- //-- void setShowBoxes(boolean)\r
+ } //-- void setShowBoxes(boolean) \r
\r
/**\r
* Sets the value of field 'showColourText'.\r
- *\r
+ * \r
* @param showColourText the value of field 'showColourText'.\r
*/\r
- public void setShowColourText(boolean showColourText) {\r
+ public void setShowColourText(boolean showColourText)\r
+ {\r
this._showColourText = showColourText;\r
this._has_showColourText = true;\r
- }\r
- //-- void setShowColourText(boolean)\r
+ } //-- void setShowColourText(boolean) \r
\r
/**\r
* Sets the value of field 'showConservation'.\r
- *\r
+ * \r
* @param showConservation the value of field 'showConservation'\r
*/\r
- public void setShowConservation(boolean showConservation) {\r
+ public void setShowConservation(boolean showConservation)\r
+ {\r
this._showConservation = showConservation;\r
this._has_showConservation = true;\r
- }\r
- //-- void setShowConservation(boolean)\r
+ } //-- void setShowConservation(boolean) \r
\r
/**\r
* Sets the value of field 'showFullId'.\r
- *\r
+ * \r
* @param showFullId the value of field 'showFullId'.\r
*/\r
- public void setShowFullId(boolean showFullId) {\r
+ public void setShowFullId(boolean showFullId)\r
+ {\r
this._showFullId = showFullId;\r
this._has_showFullId = true;\r
- }\r
- //-- void setShowFullId(boolean)\r
+ } //-- void setShowFullId(boolean) \r
\r
/**\r
* Sets the value of field 'showIdentity'.\r
- *\r
+ * \r
* @param showIdentity the value of field 'showIdentity'.\r
*/\r
- public void setShowIdentity(boolean showIdentity) {\r
+ public void setShowIdentity(boolean showIdentity)\r
+ {\r
this._showIdentity = showIdentity;\r
this._has_showIdentity = true;\r
- }\r
- //-- void setShowIdentity(boolean)\r
+ } //-- void setShowIdentity(boolean) \r
\r
/**\r
* Sets the value of field 'showQuality'.\r
- *\r
+ * \r
* @param showQuality the value of field 'showQuality'.\r
*/\r
- public void setShowQuality(boolean showQuality) {\r
+ public void setShowQuality(boolean showQuality)\r
+ {\r
this._showQuality = showQuality;\r
this._has_showQuality = true;\r
- }\r
- //-- void setShowQuality(boolean)\r
+ } //-- void setShowQuality(boolean) \r
\r
/**\r
* Sets the value of field 'showSequenceFeatures'.\r
- *\r
+ * \r
* @param showSequenceFeatures the value of field\r
* 'showSequenceFeatures'.\r
*/\r
- public void setShowSequenceFeatures(boolean showSequenceFeatures) {\r
+ public void setShowSequenceFeatures(boolean showSequenceFeatures)\r
+ {\r
this._showSequenceFeatures = showSequenceFeatures;\r
this._has_showSequenceFeatures = true;\r
- }\r
- //-- void setShowSequenceFeatures(boolean)\r
+ } //-- void setShowSequenceFeatures(boolean) \r
\r
/**\r
* Sets the value of field 'showText'.\r
- *\r
+ * \r
* @param showText the value of field 'showText'.\r
*/\r
- public void setShowText(boolean showText) {\r
+ public void setShowText(boolean showText)\r
+ {\r
this._showText = showText;\r
this._has_showText = true;\r
- }\r
- //-- void setShowText(boolean)\r
+ } //-- void setShowText(boolean) \r
\r
/**\r
* Sets the value of field 'startRes'.\r
- *\r
+ * \r
* @param startRes the value of field 'startRes'.\r
*/\r
- public void setStartRes(int startRes) {\r
+ public void setStartRes(int startRes)\r
+ {\r
this._startRes = startRes;\r
this._has_startRes = true;\r
- }\r
- //-- void setStartRes(int)\r
+ } //-- void setStartRes(int) \r
\r
/**\r
* Sets the value of field 'startSeq'.\r
- *\r
+ * \r
* @param startSeq the value of field 'startSeq'.\r
*/\r
- public void setStartSeq(int startSeq) {\r
+ public void setStartSeq(int startSeq)\r
+ {\r
this._startSeq = startSeq;\r
this._has_startSeq = true;\r
- }\r
- //-- void setStartSeq(int)\r
+ } //-- void setStartSeq(int) \r
\r
/**\r
* Sets the value of field 'title'.\r
- *\r
+ * \r
* @param title the value of field 'title'.\r
*/\r
- public void setTitle(java.lang.String title) {\r
+ public void setTitle(java.lang.String title)\r
+ {\r
this._title = title;\r
- }\r
- //-- void setTitle(java.lang.String)\r
+ } //-- void setTitle(java.lang.String) \r
\r
/**\r
* Sets the value of field 'width'.\r
- *\r
+ * \r
* @param width the value of field 'width'.\r
*/\r
- public void setWidth(int width) {\r
+ public void setWidth(int width)\r
+ {\r
this._width = width;\r
this._has_width = true;\r
- }\r
- //-- void setWidth(int)\r
+ } //-- void setWidth(int) \r
\r
/**\r
* Sets the value of field 'wrapAlignment'.\r
- *\r
+ * \r
* @param wrapAlignment the value of field 'wrapAlignment'.\r
*/\r
- public void setWrapAlignment(boolean wrapAlignment) {\r
+ public void setWrapAlignment(boolean wrapAlignment)\r
+ {\r
this._wrapAlignment = wrapAlignment;\r
this._has_wrapAlignment = true;\r
- }\r
- //-- void setWrapAlignment(boolean)\r
+ } //-- void setWrapAlignment(boolean) \r
\r
/**\r
* Sets the value of field 'xpos'.\r
- *\r
+ * \r
* @param xpos the value of field 'xpos'.\r
*/\r
- public void setXpos(int xpos) {\r
+ public void setXpos(int xpos)\r
+ {\r
this._xpos = xpos;\r
this._has_xpos = true;\r
- }\r
- //-- void setXpos(int)\r
+ } //-- void setXpos(int) \r
\r
/**\r
* Sets the value of field 'ypos'.\r
- *\r
+ * \r
* @param ypos the value of field 'ypos'.\r
*/\r
- public void setYpos(int ypos) {\r
+ public void setYpos(int ypos)\r
+ {\r
this._ypos = ypos;\r
this._has_ypos = true;\r
- }\r
- //-- void setYpos(int)\r
+ } //-- void setYpos(int) \r
\r
/**\r
* Method unmarshal\r
- *\r
- *\r
- *\r
+ * \r
+ * \r
+ * \r
* @param reader\r
* @return Object\r
*/\r
public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, \r
- org.exolab.castor.xml.ValidationException {\r
- return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding.Viewport.class,\r
- reader);\r
- }\r
- //-- java.lang.Object unmarshal(java.io.Reader)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding.Viewport.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader) \r
\r
/**\r
* Method validate\r
- *\r
+ * \r
*/\r
- public void validate() throws org.exolab.castor.xml.ValidationException {\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- }\r
- //-- void validate()\r
+ } //-- void validate() \r
+\r
}\r
git://source.jalview.org / jalview.git / blobdiff