/*\r
- * This class was automatically generated with \r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+*/\r
+\r
+/*\r
+ * This class was automatically generated with\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
*/\r
\r
+\r
package jalview.binding;\r
\r
//---------------------------------/\r
\r
/**\r
* Class Viewport.\r
- * \r
+ *\r
* @version $Revision$ $Date$\r
*/\r
public class Viewport implements java.io.Serializable {\r
\r
/**\r
* Method deleteConsThreshold\r
- * \r
+ *\r
*/\r
public void deleteConsThreshold()\r
{\r
this._has_consThreshold= false;\r
- } //-- void deleteConsThreshold() \r
+ } //-- void deleteConsThreshold()\r
\r
/**\r
* Method deleteConservationSelected\r
- * \r
+ *\r
*/\r
public void deleteConservationSelected()\r
{\r
this._has_conservationSelected= false;\r
- } //-- void deleteConservationSelected() \r
+ } //-- void deleteConservationSelected()\r
\r
/**\r
* Method deleteFontSize\r
- * \r
+ *\r
*/\r
public void deleteFontSize()\r
{\r
this._has_fontSize= false;\r
- } //-- void deleteFontSize() \r
+ } //-- void deleteFontSize()\r
\r
/**\r
* Method deleteFontStyle\r
- * \r
+ *\r
*/\r
public void deleteFontStyle()\r
{\r
this._has_fontStyle= false;\r
- } //-- void deleteFontStyle() \r
+ } //-- void deleteFontStyle()\r
\r
/**\r
* Method deleteHeight\r
- * \r
+ *\r
*/\r
public void deleteHeight()\r
{\r
this._has_height= false;\r
- } //-- void deleteHeight() \r
+ } //-- void deleteHeight()\r
\r
/**\r
* Method deletePidSelected\r
- * \r
+ *\r
*/\r
public void deletePidSelected()\r
{\r
this._has_pidSelected= false;\r
- } //-- void deletePidSelected() \r
+ } //-- void deletePidSelected()\r
\r
/**\r
* Method deletePidThreshold\r
- * \r
+ *\r
*/\r
public void deletePidThreshold()\r
{\r
this._has_pidThreshold= false;\r
- } //-- void deletePidThreshold() \r
+ } //-- void deletePidThreshold()\r
\r
/**\r
* Method deleteRenderGaps\r
- * \r
+ *\r
*/\r
public void deleteRenderGaps()\r
{\r
this._has_renderGaps= false;\r
- } //-- void deleteRenderGaps() \r
+ } //-- void deleteRenderGaps()\r
\r
/**\r
* Method deleteShowAnnotation\r
- * \r
+ *\r
*/\r
public void deleteShowAnnotation()\r
{\r
this._has_showAnnotation= false;\r
- } //-- void deleteShowAnnotation() \r
+ } //-- void deleteShowAnnotation()\r
\r
/**\r
* Method deleteShowBoxes\r
- * \r
+ *\r
*/\r
public void deleteShowBoxes()\r
{\r
this._has_showBoxes= false;\r
- } //-- void deleteShowBoxes() \r
+ } //-- void deleteShowBoxes()\r
\r
/**\r
* Method deleteShowColourText\r
- * \r
+ *\r
*/\r
public void deleteShowColourText()\r
{\r
this._has_showColourText= false;\r
- } //-- void deleteShowColourText() \r
+ } //-- void deleteShowColourText()\r
\r
/**\r
* Method deleteShowConservation\r
- * \r
+ *\r
*/\r
public void deleteShowConservation()\r
{\r
this._has_showConservation= false;\r
- } //-- void deleteShowConservation() \r
+ } //-- void deleteShowConservation()\r
\r
/**\r
* Method deleteShowFullId\r
- * \r
+ *\r
*/\r
public void deleteShowFullId()\r
{\r
this._has_showFullId= false;\r
- } //-- void deleteShowFullId() \r
+ } //-- void deleteShowFullId()\r
\r
/**\r
* Method deleteShowIdentity\r
- * \r
+ *\r
*/\r
public void deleteShowIdentity()\r
{\r
this._has_showIdentity= false;\r
- } //-- void deleteShowIdentity() \r
+ } //-- void deleteShowIdentity()\r
\r
/**\r
* Method deleteShowQuality\r
- * \r
+ *\r
*/\r
public void deleteShowQuality()\r
{\r
this._has_showQuality= false;\r
- } //-- void deleteShowQuality() \r
+ } //-- void deleteShowQuality()\r
\r
/**\r
* Method deleteShowSequenceFeatures\r
- * \r
+ *\r
*/\r
public void deleteShowSequenceFeatures()\r
{\r
this._has_showSequenceFeatures= false;\r
- } //-- void deleteShowSequenceFeatures() \r
+ } //-- void deleteShowSequenceFeatures()\r
\r
/**\r
* Method deleteShowText\r
- * \r
+ *\r
*/\r
public void deleteShowText()\r
{\r
this._has_showText= false;\r
- } //-- void deleteShowText() \r
+ } //-- void deleteShowText()\r
\r
/**\r
* Method deleteStartRes\r
- * \r
+ *\r
*/\r
public void deleteStartRes()\r
{\r
this._has_startRes= false;\r
- } //-- void deleteStartRes() \r
+ } //-- void deleteStartRes()\r
\r
/**\r
* Method deleteStartSeq\r
- * \r
+ *\r
*/\r
public void deleteStartSeq()\r
{\r
this._has_startSeq= false;\r
- } //-- void deleteStartSeq() \r
+ } //-- void deleteStartSeq()\r
\r
/**\r
* Method deleteWidth\r
- * \r
+ *\r
*/\r
public void deleteWidth()\r
{\r
this._has_width= false;\r
- } //-- void deleteWidth() \r
+ } //-- void deleteWidth()\r
\r
/**\r
* Method deleteWrapAlignment\r
- * \r
+ *\r
*/\r
public void deleteWrapAlignment()\r
{\r
this._has_wrapAlignment= false;\r
- } //-- void deleteWrapAlignment() \r
+ } //-- void deleteWrapAlignment()\r
\r
/**\r
* Method deleteXpos\r
- * \r
+ *\r
*/\r
public void deleteXpos()\r
{\r
this._has_xpos= false;\r
- } //-- void deleteXpos() \r
+ } //-- void deleteXpos()\r
\r
/**\r
* Method deleteYpos\r
- * \r
+ *\r
*/\r
public void deleteYpos()\r
{\r
this._has_ypos= false;\r
- } //-- void deleteYpos() \r
+ } //-- void deleteYpos()\r
\r
/**\r
* Returns the value of field 'bgColour'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'bgColour'.\r
*/\r
public java.lang.String getBgColour()\r
{\r
return this._bgColour;\r
- } //-- java.lang.String getBgColour() \r
+ } //-- java.lang.String getBgColour()\r
\r
/**\r
* Returns the value of field 'consThreshold'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'consThreshold'.\r
*/\r
public int getConsThreshold()\r
{\r
return this._consThreshold;\r
- } //-- int getConsThreshold() \r
+ } //-- int getConsThreshold()\r
\r
/**\r
* Returns the value of field 'conservationSelected'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'conservationSelected'.\r
*/\r
public boolean getConservationSelected()\r
{\r
return this._conservationSelected;\r
- } //-- boolean getConservationSelected() \r
+ } //-- boolean getConservationSelected()\r
\r
/**\r
* Returns the value of field 'fontName'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'fontName'.\r
*/\r
public java.lang.String getFontName()\r
{\r
return this._fontName;\r
- } //-- java.lang.String getFontName() \r
+ } //-- java.lang.String getFontName()\r
\r
/**\r
* Returns the value of field 'fontSize'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'fontSize'.\r
*/\r
public int getFontSize()\r
{\r
return this._fontSize;\r
- } //-- int getFontSize() \r
+ } //-- int getFontSize()\r
\r
/**\r
* Returns the value of field 'fontStyle'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'fontStyle'.\r
*/\r
public int getFontStyle()\r
{\r
return this._fontStyle;\r
- } //-- int getFontStyle() \r
+ } //-- int getFontStyle()\r
\r
/**\r
* Returns the value of field 'height'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'height'.\r
*/\r
public int getHeight()\r
{\r
return this._height;\r
- } //-- int getHeight() \r
+ } //-- int getHeight()\r
\r
/**\r
* Returns the value of field 'pidSelected'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'pidSelected'.\r
*/\r
public boolean getPidSelected()\r
{\r
return this._pidSelected;\r
- } //-- boolean getPidSelected() \r
+ } //-- boolean getPidSelected()\r
\r
/**\r
* Returns the value of field 'pidThreshold'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'pidThreshold'.\r
*/\r
public int getPidThreshold()\r
{\r
return this._pidThreshold;\r
- } //-- int getPidThreshold() \r
+ } //-- int getPidThreshold()\r
\r
/**\r
* Returns the value of field 'renderGaps'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'renderGaps'.\r
*/\r
public boolean getRenderGaps()\r
{\r
return this._renderGaps;\r
- } //-- boolean getRenderGaps() \r
+ } //-- boolean getRenderGaps()\r
\r
/**\r
* Returns the value of field 'showAnnotation'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showAnnotation'.\r
*/\r
public boolean getShowAnnotation()\r
{\r
return this._showAnnotation;\r
- } //-- boolean getShowAnnotation() \r
+ } //-- boolean getShowAnnotation()\r
\r
/**\r
* Returns the value of field 'showBoxes'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showBoxes'.\r
*/\r
public boolean getShowBoxes()\r
{\r
return this._showBoxes;\r
- } //-- boolean getShowBoxes() \r
+ } //-- boolean getShowBoxes()\r
\r
/**\r
* Returns the value of field 'showColourText'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showColourText'.\r
*/\r
public boolean getShowColourText()\r
{\r
return this._showColourText;\r
- } //-- boolean getShowColourText() \r
+ } //-- boolean getShowColourText()\r
\r
/**\r
* Returns the value of field 'showConservation'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showConservation'.\r
*/\r
public boolean getShowConservation()\r
{\r
return this._showConservation;\r
- } //-- boolean getShowConservation() \r
+ } //-- boolean getShowConservation()\r
\r
/**\r
* Returns the value of field 'showFullId'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showFullId'.\r
*/\r
public boolean getShowFullId()\r
{\r
return this._showFullId;\r
- } //-- boolean getShowFullId() \r
+ } //-- boolean getShowFullId()\r
\r
/**\r
* Returns the value of field 'showIdentity'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showIdentity'.\r
*/\r
public boolean getShowIdentity()\r
{\r
return this._showIdentity;\r
- } //-- boolean getShowIdentity() \r
+ } //-- boolean getShowIdentity()\r
\r
/**\r
* Returns the value of field 'showQuality'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showQuality'.\r
*/\r
public boolean getShowQuality()\r
{\r
return this._showQuality;\r
- } //-- boolean getShowQuality() \r
+ } //-- boolean getShowQuality()\r
\r
/**\r
* Returns the value of field 'showSequenceFeatures'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showSequenceFeatures'.\r
*/\r
public boolean getShowSequenceFeatures()\r
{\r
return this._showSequenceFeatures;\r
- } //-- boolean getShowSequenceFeatures() \r
+ } //-- boolean getShowSequenceFeatures()\r
\r
/**\r
* Returns the value of field 'showText'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'showText'.\r
*/\r
public boolean getShowText()\r
{\r
return this._showText;\r
- } //-- boolean getShowText() \r
+ } //-- boolean getShowText()\r
\r
/**\r
* Returns the value of field 'startRes'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'startRes'.\r
*/\r
public int getStartRes()\r
{\r
return this._startRes;\r
- } //-- int getStartRes() \r
+ } //-- int getStartRes()\r
\r
/**\r
* Returns the value of field 'startSeq'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'startSeq'.\r
*/\r
public int getStartSeq()\r
{\r
return this._startSeq;\r
- } //-- int getStartSeq() \r
+ } //-- int getStartSeq()\r
\r
/**\r
* Returns the value of field 'title'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'title'.\r
*/\r
public java.lang.String getTitle()\r
{\r
return this._title;\r
- } //-- java.lang.String getTitle() \r
+ } //-- java.lang.String getTitle()\r
\r
/**\r
* Returns the value of field 'width'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'width'.\r
*/\r
public int getWidth()\r
{\r
return this._width;\r
- } //-- int getWidth() \r
+ } //-- int getWidth()\r
\r
/**\r
* Returns the value of field 'wrapAlignment'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'wrapAlignment'.\r
*/\r
public boolean getWrapAlignment()\r
{\r
return this._wrapAlignment;\r
- } //-- boolean getWrapAlignment() \r
+ } //-- boolean getWrapAlignment()\r
\r
/**\r
* Returns the value of field 'xpos'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'xpos'.\r
*/\r
public int getXpos()\r
{\r
return this._xpos;\r
- } //-- int getXpos() \r
+ } //-- int getXpos()\r
\r
/**\r
* Returns the value of field 'ypos'.\r
- * \r
+ *\r
* @return int\r
* @return the value of field 'ypos'.\r
*/\r
public int getYpos()\r
{\r
return this._ypos;\r
- } //-- int getYpos() \r
+ } //-- int getYpos()\r
\r
/**\r
* Method hasConsThreshold\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasConsThreshold()\r
{\r
return this._has_consThreshold;\r
- } //-- boolean hasConsThreshold() \r
+ } //-- boolean hasConsThreshold()\r
\r
/**\r
* Method hasConservationSelected\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasConservationSelected()\r
{\r
return this._has_conservationSelected;\r
- } //-- boolean hasConservationSelected() \r
+ } //-- boolean hasConservationSelected()\r
\r
/**\r
* Method hasFontSize\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasFontSize()\r
{\r
return this._has_fontSize;\r
- } //-- boolean hasFontSize() \r
+ } //-- boolean hasFontSize()\r
\r
/**\r
* Method hasFontStyle\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasFontStyle()\r
{\r
return this._has_fontStyle;\r
- } //-- boolean hasFontStyle() \r
+ } //-- boolean hasFontStyle()\r
\r
/**\r
* Method hasHeight\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasHeight()\r
{\r
return this._has_height;\r
- } //-- boolean hasHeight() \r
+ } //-- boolean hasHeight()\r
\r
/**\r
* Method hasPidSelected\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasPidSelected()\r
{\r
return this._has_pidSelected;\r
- } //-- boolean hasPidSelected() \r
+ } //-- boolean hasPidSelected()\r
\r
/**\r
* Method hasPidThreshold\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasPidThreshold()\r
{\r
return this._has_pidThreshold;\r
- } //-- boolean hasPidThreshold() \r
+ } //-- boolean hasPidThreshold()\r
\r
/**\r
* Method hasRenderGaps\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasRenderGaps()\r
{\r
return this._has_renderGaps;\r
- } //-- boolean hasRenderGaps() \r
+ } //-- boolean hasRenderGaps()\r
\r
/**\r
* Method hasShowAnnotation\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowAnnotation()\r
{\r
return this._has_showAnnotation;\r
- } //-- boolean hasShowAnnotation() \r
+ } //-- boolean hasShowAnnotation()\r
\r
/**\r
* Method hasShowBoxes\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowBoxes()\r
{\r
return this._has_showBoxes;\r
- } //-- boolean hasShowBoxes() \r
+ } //-- boolean hasShowBoxes()\r
\r
/**\r
* Method hasShowColourText\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowColourText()\r
{\r
return this._has_showColourText;\r
- } //-- boolean hasShowColourText() \r
+ } //-- boolean hasShowColourText()\r
\r
/**\r
* Method hasShowConservation\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowConservation()\r
{\r
return this._has_showConservation;\r
- } //-- boolean hasShowConservation() \r
+ } //-- boolean hasShowConservation()\r
\r
/**\r
* Method hasShowFullId\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowFullId()\r
{\r
return this._has_showFullId;\r
- } //-- boolean hasShowFullId() \r
+ } //-- boolean hasShowFullId()\r
\r
/**\r
* Method hasShowIdentity\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowIdentity()\r
{\r
return this._has_showIdentity;\r
- } //-- boolean hasShowIdentity() \r
+ } //-- boolean hasShowIdentity()\r
\r
/**\r
* Method hasShowQuality\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowQuality()\r
{\r
return this._has_showQuality;\r
- } //-- boolean hasShowQuality() \r
+ } //-- boolean hasShowQuality()\r
\r
/**\r
* Method hasShowSequenceFeatures\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowSequenceFeatures()\r
{\r
return this._has_showSequenceFeatures;\r
- } //-- boolean hasShowSequenceFeatures() \r
+ } //-- boolean hasShowSequenceFeatures()\r
\r
/**\r
* Method hasShowText\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasShowText()\r
{\r
return this._has_showText;\r
- } //-- boolean hasShowText() \r
+ } //-- boolean hasShowText()\r
\r
/**\r
* Method hasStartRes\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasStartRes()\r
{\r
return this._has_startRes;\r
- } //-- boolean hasStartRes() \r
+ } //-- boolean hasStartRes()\r
\r
/**\r
* Method hasStartSeq\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasStartSeq()\r
{\r
return this._has_startSeq;\r
- } //-- boolean hasStartSeq() \r
+ } //-- boolean hasStartSeq()\r
\r
/**\r
* Method hasWidth\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasWidth()\r
{\r
return this._has_width;\r
- } //-- boolean hasWidth() \r
+ } //-- boolean hasWidth()\r
\r
/**\r
* Method hasWrapAlignment\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasWrapAlignment()\r
{\r
return this._has_wrapAlignment;\r
- } //-- boolean hasWrapAlignment() \r
+ } //-- boolean hasWrapAlignment()\r
\r
/**\r
* Method hasXpos\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasXpos()\r
{\r
return this._has_xpos;\r
- } //-- boolean hasXpos() \r
+ } //-- boolean hasXpos()\r
\r
/**\r
* Method hasYpos\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasYpos()\r
{\r
return this._has_ypos;\r
- } //-- boolean hasYpos() \r
+ } //-- boolean hasYpos()\r
\r
/**\r
* Method isValid\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean isValid()\r
return false;\r
}\r
return true;\r
- } //-- boolean isValid() \r
+ } //-- boolean isValid()\r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
- \r
+\r
Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
+ } //-- void marshal(java.io.Writer)\r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
- \r
+\r
Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
+ } //-- void marshal(org.xml.sax.ContentHandler)\r
\r
/**\r
* Sets the value of field 'bgColour'.\r
- * \r
+ *\r
* @param bgColour the value of field 'bgColour'.\r
*/\r
public void setBgColour(java.lang.String bgColour)\r
{\r
this._bgColour = bgColour;\r
- } //-- void setBgColour(java.lang.String) \r
+ } //-- void setBgColour(java.lang.String)\r
\r
/**\r
* Sets the value of field 'consThreshold'.\r
- * \r
+ *\r
* @param consThreshold the value of field 'consThreshold'.\r
*/\r
public void setConsThreshold(int consThreshold)\r
{\r
this._consThreshold = consThreshold;\r
this._has_consThreshold = true;\r
- } //-- void setConsThreshold(int) \r
+ } //-- void setConsThreshold(int)\r
\r
/**\r
* Sets the value of field 'conservationSelected'.\r
- * \r
+ *\r
* @param conservationSelected the value of field\r
* 'conservationSelected'.\r
*/\r
{\r
this._conservationSelected = conservationSelected;\r
this._has_conservationSelected = true;\r
- } //-- void setConservationSelected(boolean) \r
+ } //-- void setConservationSelected(boolean)\r
\r
/**\r
* Sets the value of field 'fontName'.\r
- * \r
+ *\r
* @param fontName the value of field 'fontName'.\r
*/\r
public void setFontName(java.lang.String fontName)\r
{\r
this._fontName = fontName;\r
- } //-- void setFontName(java.lang.String) \r
+ } //-- void setFontName(java.lang.String)\r
\r
/**\r
* Sets the value of field 'fontSize'.\r
- * \r
+ *\r
* @param fontSize the value of field 'fontSize'.\r
*/\r
public void setFontSize(int fontSize)\r
{\r
this._fontSize = fontSize;\r
this._has_fontSize = true;\r
- } //-- void setFontSize(int) \r
+ } //-- void setFontSize(int)\r
\r
/**\r
* Sets the value of field 'fontStyle'.\r
- * \r
+ *\r
* @param fontStyle the value of field 'fontStyle'.\r
*/\r
public void setFontStyle(int fontStyle)\r
{\r
this._fontStyle = fontStyle;\r
this._has_fontStyle = true;\r
- } //-- void setFontStyle(int) \r
+ } //-- void setFontStyle(int)\r
\r
/**\r
* Sets the value of field 'height'.\r
- * \r
+ *\r
* @param height the value of field 'height'.\r
*/\r
public void setHeight(int height)\r
{\r
this._height = height;\r
this._has_height = true;\r
- } //-- void setHeight(int) \r
+ } //-- void setHeight(int)\r
\r
/**\r
* Sets the value of field 'pidSelected'.\r
- * \r
+ *\r
* @param pidSelected the value of field 'pidSelected'.\r
*/\r
public void setPidSelected(boolean pidSelected)\r
{\r
this._pidSelected = pidSelected;\r
this._has_pidSelected = true;\r
- } //-- void setPidSelected(boolean) \r
+ } //-- void setPidSelected(boolean)\r
\r
/**\r
* Sets the value of field 'pidThreshold'.\r
- * \r
+ *\r
* @param pidThreshold the value of field 'pidThreshold'.\r
*/\r
public void setPidThreshold(int pidThreshold)\r
{\r
this._pidThreshold = pidThreshold;\r
this._has_pidThreshold = true;\r
- } //-- void setPidThreshold(int) \r
+ } //-- void setPidThreshold(int)\r
\r
/**\r
* Sets the value of field 'renderGaps'.\r
- * \r
+ *\r
* @param renderGaps the value of field 'renderGaps'.\r
*/\r
public void setRenderGaps(boolean renderGaps)\r
{\r
this._renderGaps = renderGaps;\r
this._has_renderGaps = true;\r
- } //-- void setRenderGaps(boolean) \r
+ } //-- void setRenderGaps(boolean)\r
\r
/**\r
* Sets the value of field 'showAnnotation'.\r
- * \r
+ *\r
* @param showAnnotation the value of field 'showAnnotation'.\r
*/\r
public void setShowAnnotation(boolean showAnnotation)\r
{\r
this._showAnnotation = showAnnotation;\r
this._has_showAnnotation = true;\r
- } //-- void setShowAnnotation(boolean) \r
+ } //-- void setShowAnnotation(boolean)\r
\r
/**\r
* Sets the value of field 'showBoxes'.\r
- * \r
+ *\r
* @param showBoxes the value of field 'showBoxes'.\r
*/\r
public void setShowBoxes(boolean showBoxes)\r
{\r
this._showBoxes = showBoxes;\r
this._has_showBoxes = true;\r
- } //-- void setShowBoxes(boolean) \r
+ } //-- void setShowBoxes(boolean)\r
\r
/**\r
* Sets the value of field 'showColourText'.\r
- * \r
+ *\r
* @param showColourText the value of field 'showColourText'.\r
*/\r
public void setShowColourText(boolean showColourText)\r
{\r
this._showColourText = showColourText;\r
this._has_showColourText = true;\r
- } //-- void setShowColourText(boolean) \r
+ } //-- void setShowColourText(boolean)\r
\r
/**\r
* Sets the value of field 'showConservation'.\r
- * \r
+ *\r
* @param showConservation the value of field 'showConservation'\r
*/\r
public void setShowConservation(boolean showConservation)\r
{\r
this._showConservation = showConservation;\r
this._has_showConservation = true;\r
- } //-- void setShowConservation(boolean) \r
+ } //-- void setShowConservation(boolean)\r
\r
/**\r
* Sets the value of field 'showFullId'.\r
- * \r
+ *\r
* @param showFullId the value of field 'showFullId'.\r
*/\r
public void setShowFullId(boolean showFullId)\r
{\r
this._showFullId = showFullId;\r
this._has_showFullId = true;\r
- } //-- void setShowFullId(boolean) \r
+ } //-- void setShowFullId(boolean)\r
\r
/**\r
* Sets the value of field 'showIdentity'.\r
- * \r
+ *\r
* @param showIdentity the value of field 'showIdentity'.\r
*/\r
public void setShowIdentity(boolean showIdentity)\r
{\r
this._showIdentity = showIdentity;\r
this._has_showIdentity = true;\r
- } //-- void setShowIdentity(boolean) \r
+ } //-- void setShowIdentity(boolean)\r
\r
/**\r
* Sets the value of field 'showQuality'.\r
- * \r
+ *\r
* @param showQuality the value of field 'showQuality'.\r
*/\r
public void setShowQuality(boolean showQuality)\r
{\r
this._showQuality = showQuality;\r
this._has_showQuality = true;\r
- } //-- void setShowQuality(boolean) \r
+ } //-- void setShowQuality(boolean)\r
\r
/**\r
* Sets the value of field 'showSequenceFeatures'.\r
- * \r
+ *\r
* @param showSequenceFeatures the value of field\r
* 'showSequenceFeatures'.\r
*/\r
{\r
this._showSequenceFeatures = showSequenceFeatures;\r
this._has_showSequenceFeatures = true;\r
- } //-- void setShowSequenceFeatures(boolean) \r
+ } //-- void setShowSequenceFeatures(boolean)\r
\r
/**\r
* Sets the value of field 'showText'.\r
- * \r
+ *\r
* @param showText the value of field 'showText'.\r
*/\r
public void setShowText(boolean showText)\r
{\r
this._showText = showText;\r
this._has_showText = true;\r
- } //-- void setShowText(boolean) \r
+ } //-- void setShowText(boolean)\r
\r
/**\r
* Sets the value of field 'startRes'.\r
- * \r
+ *\r
* @param startRes the value of field 'startRes'.\r
*/\r
public void setStartRes(int startRes)\r
{\r
this._startRes = startRes;\r
this._has_startRes = true;\r
- } //-- void setStartRes(int) \r
+ } //-- void setStartRes(int)\r
\r
/**\r
* Sets the value of field 'startSeq'.\r
- * \r
+ *\r
* @param startSeq the value of field 'startSeq'.\r
*/\r
public void setStartSeq(int startSeq)\r
{\r
this._startSeq = startSeq;\r
this._has_startSeq = true;\r
- } //-- void setStartSeq(int) \r
+ } //-- void setStartSeq(int)\r
\r
/**\r
* Sets the value of field 'title'.\r
- * \r
+ *\r
* @param title the value of field 'title'.\r
*/\r
public void setTitle(java.lang.String title)\r
{\r
this._title = title;\r
- } //-- void setTitle(java.lang.String) \r
+ } //-- void setTitle(java.lang.String)\r
\r
/**\r
* Sets the value of field 'width'.\r
- * \r
+ *\r
* @param width the value of field 'width'.\r
*/\r
public void setWidth(int width)\r
{\r
this._width = width;\r
this._has_width = true;\r
- } //-- void setWidth(int) \r
+ } //-- void setWidth(int)\r
\r
/**\r
* Sets the value of field 'wrapAlignment'.\r
- * \r
+ *\r
* @param wrapAlignment the value of field 'wrapAlignment'.\r
*/\r
public void setWrapAlignment(boolean wrapAlignment)\r
{\r
this._wrapAlignment = wrapAlignment;\r
this._has_wrapAlignment = true;\r
- } //-- void setWrapAlignment(boolean) \r
+ } //-- void setWrapAlignment(boolean)\r
\r
/**\r
* Sets the value of field 'xpos'.\r
- * \r
+ *\r
* @param xpos the value of field 'xpos'.\r
*/\r
public void setXpos(int xpos)\r
{\r
this._xpos = xpos;\r
this._has_xpos = true;\r
- } //-- void setXpos(int) \r
+ } //-- void setXpos(int)\r
\r
/**\r
* Sets the value of field 'ypos'.\r
- * \r
+ *\r
* @param ypos the value of field 'ypos'.\r
*/\r
public void setYpos(int ypos)\r
{\r
this._ypos = ypos;\r
this._has_ypos = true;\r
- } //-- void setYpos(int) \r
+ } //-- void setYpos(int)\r
\r
/**\r
* Method unmarshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param reader\r
* @return Object\r
*/\r
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
return (jalview.binding.Viewport) Unmarshaller.unmarshal(jalview.binding.Viewport.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader) \r
+ } //-- java.lang.Object unmarshal(java.io.Reader)\r
\r
/**\r
* Method validate\r
- * \r
+ *\r
*/\r
public void validate()\r
throws org.exolab.castor.xml.ValidationException\r
{\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- } //-- void validate() \r
+ } //-- void validate()\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff