* shift right any features that start at the cut position,
* unless they were truncated
*/
- List<SequenceFeature> sfs = seq.findFeatures(start, start);
+ List<SequenceFeature> sfs = seq.getFeatures().findFeatures(start,
+ start);
for (SequenceFeature sf : sfs)
{
if (sf.getBegin() == start)