/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
*/
-import jalview.datamodel.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
public class RemoveGapColCommand extends EditCommand
{
int startCol = -1, endCol = -1;
columnsDeleted = 0;
- edits = new Edit[0];
+ clearEdits();
boolean delete = true;
for (int i = start; i <= end; i++)
if (!delete && startCol > -1)
{
- this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, endCol
- - startCol, al, false, null);
+ this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+ endCol - startCol, al, false, null);
columnsDeleted += (endCol - startCol);
startCol = -1;
// This is for empty columns at the
// end of the alignment
- this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, end
- - startCol + 1, al, false, null);
+ this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+ end - startCol + 1, al, false, null);
columnsDeleted += (end - startCol + 1);
}