JAL-1807 explicit imports (jalview.commands)

[jalview.git] / src / jalview / commands / RemoveGapsCommand.java

diff --git a/src/jalview/commands/RemoveGapsCommand.java b/src/jalview/commands/RemoveGapsCommand.java
index 2e8d744..3a485c8 100644 (file)
--- a/src/jalview/commands/RemoveGapsCommand.java
+++ b/src/jalview/commands/RemoveGapsCommand.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -39,7 +39,9 @@ package jalview.commands;
  * Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
  */
 
-import jalview.datamodel.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
+import jalview.util.Comparison;
 
 public class RemoveGapsCommand extends EditCommand
 {
@@ -74,7 +76,7 @@ public class RemoveGapsCommand extends EditCommand
 
     int j, jSize;
 
-    edits = new Edit[0];
+    clearEdits();
 
     boolean delete = true;
     char[] sequence;
@@ -91,7 +93,7 @@ public class RemoveGapsCommand extends EditCommand
       {
         delete = true;
 
-        if (!jalview.util.Comparison.isGap(sequence[j]))
+        if (!Comparison.isGap(sequence[j]))
         {
           if (delete)
           {
@@ -108,7 +110,7 @@ public class RemoveGapsCommand extends EditCommand
 
         if (!delete && startCol > -1)
         {
-          this.appendEdit(DELETE_GAP, new SequenceI[]
+          this.appendEdit(Action.DELETE_GAP, new SequenceI[]
           { seqs[s] }, start + startCol - deletedCols, endCol - startCol,
                   al, false, null);
 
@@ -119,7 +121,7 @@ public class RemoveGapsCommand extends EditCommand
       }
       if (delete && startCol > -1)
       {
-        this.appendEdit(DELETE_GAP, new SequenceI[]
+        this.appendEdit(Action.DELETE_GAP, new SequenceI[]
         { seqs[s] }, start + startCol - deletedCols, jSize - startCol, al,
                 false, null);
       }