{
int ist = sq.findPosition(sqcol.getStartRes());
int iend = sq.findPosition(sqcol.getEndRes()); // see JAL-2526
- List<SequenceFeature> sfs = sq.getFeatures().findFeatures(ist,
- iend, featureType);
+ List<SequenceFeature> sfs = sq.findFeatures(ist, iend, featureType);
boolean overlap = false;
for (SequenceFeature sf : sfs)
{