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JAL-1705 handle case of sequence with no dataset sequence
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignedCodonFrame.java
diff --git
a/src/jalview/datamodel/AlignedCodonFrame.java
b/src/jalview/datamodel/AlignedCodonFrame.java
index
5dfd434
..
3fc8c28
100644
(file)
--- a/
src/jalview/datamodel/AlignedCodonFrame.java
+++ b/
src/jalview/datamodel/AlignedCodonFrame.java
@@
-321,7
+321,8
@@
public class AlignedCodonFrame
{
for (SequenceI sourceAligned : al.getSequences())
{
- if (ssm.mapping.to == sourceAligned.getDatasetSequence())
+ if (ssm.mapping.to == sourceAligned.getDatasetSequence()
+ || ssm.mapping.to == sourceAligned)
{
return sourceAligned;
}