*/
package jalview.datamodel;
-import java.util.ArrayList;
-import java.util.List;
-
import jalview.util.MapList;
import jalview.util.MappingUtils;
+import java.util.ArrayList;
+import java.util.List;
+
/**
* Stores mapping between the columns of a protein alignment and a DNA alignment
* and a list of individual codon to amino acid mappings between sequences.
public class AlignedCodonFrame
{
- /*
+ /**
* tied array of na Sequence objects.
*/
private SequenceI[] dnaSeqs = null;
- /*
+ /**
* tied array of Mappings to protein sequence Objects and SequenceI[]
* aaSeqs=null; MapLists where each maps from the corresponding dnaSeqs
* element to corresponding aaSeqs element