\r
\r
/** */\r
- public SequenceGroup findGroup(int i)\r
- {\r
- return findGroup(getSequenceAt(i));\r
- }\r
-\r
- /** */\r
public SequenceGroup findGroup(SequenceI s)\r
{\r
for (int i = 0; i < this.groups.size(); i++)\r
{\r
SequenceGroup sg = (SequenceGroup) groups.elementAt(i);\r
\r
- if (sg.sequences.contains(s))\r
+ if (sg.getSequences(false).contains(s))\r
{\r
return sg;\r
}\r
for (int i = 0; i < gSize; i++)\r
{\r
SequenceGroup sg = (SequenceGroup) groups.elementAt(i);\r
- if(sg==null || sg.sequences==null)\r
+ if(sg==null || sg.getSequences(false)==null)\r
{\r
this.deleteGroup(sg);\r
gSize--;\r
continue;\r
}\r
\r
- if (sg.sequences.contains(s))\r
+ if (sg.getSequences(false).contains(s))\r
{\r
temp.addElement(sg);\r
}\r