Annotation adjustment moved to EditCommand

[jalview.git] / src / jalview / datamodel / Alignment.java

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index f255ab5..2ad0588 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -470,58 +470,6 @@ public class Alignment implements AlignmentI
     }
 
 
-    public void adjustSequenceAnnotations(int position,
-                                          int number,
-                                          boolean insert)
-    {
-      if(annotations!=null)
-      {
-        int aSize, tSize;
-        Annotation [] temp;
-        for (int a = 0; a < annotations.length; a++)
-        {
-          if(annotations[a].autoCalculated)
-          {
-            System.out.println("ignore "+annotations[a].label);
-            continue;
-          }
-          aSize = annotations[a].annotations.length;
-          if(insert)
-            tSize = aSize + number;
-          else
-            tSize = aSize - number;
-
-          temp = new Annotation[tSize];
-
-          if(insert)
-          {
-            System.arraycopy(annotations[a].annotations,
-                0, temp, 0, position);
-
-            System.arraycopy(annotations[a].annotations,
-                position, temp, position+number, aSize - position);
-          }
-          else
-          {
-              System.arraycopy(annotations[a].annotations,
-                               0, temp, 0, position);
-
-              System.arraycopy(annotations[a].annotations,
-                               position + number, temp, position,
-                               aSize - position - number);
-          }
-
-          annotations[a].annotations = temp;
-
-
-        //  if (annotations[a].sequenceRef != null)
-          {
-        //    annotations[a].adjustForAlignment();
-          }
-        }
-      }
-    }
-
     /**
      * DOCUMENT ME!
      *