}\r
}\r
\r
- public SequenceI findShortName(String name)\r
- {\r
- int i = 0;\r
-\r
- while (i < sequences.size())\r
- {\r
- if (getSequenceAt(i).getShortName().equals(name))\r
- {\r
- return getSequenceAt(i);\r
- }\r
-\r
- i++;\r
- }\r
-\r
- return null;\r
- }\r
-\r
/** */\r
public SequenceI findName(String name)\r
{\r
for (int i = 0; i < getHeight(); i++)\r
{\r
\r
- seqs[i] = new Sequence(getSequenceAt(i).getName(),\r
+ seqs[i] = new Sequence(getSequenceAt(i).getDisplayId(true),\r
AlignSeq.extractGaps(\r
jalview.util.Comparison.GapChars,\r
getSequenceAt(i).getSequence()\r