Don't parse input id, leave it as it is

[jalview.git] / src / jalview / datamodel / Alignment.java

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index d945ec6..3a1b44a 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -458,11 +458,9 @@ public class Alignment implements AlignmentI
 \r
         while (i < sequences.size())\r
         {\r
-            SequenceI s = getSequenceAt(i);\r
-\r
-            if (s.getName().equals(name))\r
+            if (getSequenceAt(i).getName().equals(name))\r
             {\r
-                return s;\r
+                return getSequenceAt(i);\r
             }\r
 \r
             i++;\r
@@ -705,7 +703,7 @@ public class Alignment implements AlignmentI
         for (int i = 0; i < getHeight(); i++)\r
         {\r
 \r
-          seqs[i] = new Sequence(getSequenceAt(i).getName(),\r
+          seqs[i] = new Sequence(getSequenceAt(i).getDisplayId(true),\r
                                  AlignSeq.extractGaps(\r
                                      jalview.util.Comparison.GapChars,\r
                                      getSequenceAt(i).getSequence()\r