Merge branch 'feature/JAL-3187linkedFeatures' into feature/JAL-3251biotypedMappings

[jalview.git] / src / jalview / datamodel / Alignment.java

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 3b0ca46..5ad8be1 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -21,7 +21,6 @@
 package jalview.datamodel;
 
 import jalview.analysis.AlignmentUtils;
-import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
 import jalview.io.FastaFile;
 import jalview.util.Comparison;
 import jalview.util.LinkedIdentityHashSet;
@@ -1146,7 +1145,7 @@ public class Alignment implements AlignmentI, AutoCloseable
     // verify all mappings are in dataset
     for (AlignedCodonFrame cf : codonFrameList)
     {
-      for (SequenceToSequenceMapping ssm : cf.getMappings())
+      for (SequenceMapping ssm : cf.getMappings())
       {
         if (!seqs.contains(ssm.getFromSeq()))
         {