package jalview.datamodel;
import jalview.analysis.AlignmentUtils;
-import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
import jalview.io.FastaFile;
import jalview.util.Comparison;
import jalview.util.LinkedIdentityHashSet;
// verify all mappings are in dataset
for (AlignedCodonFrame cf : codonFrameList)
{
- for (SequenceToSequenceMapping ssm : cf.getMappings())
+ for (SequenceMapping ssm : cf.getMappings())
{
if (!seqs.contains(ssm.getFromSeq()))
{