while (i < sequences.size())
{
- SequenceI s = getSequenceAt(i);
+ Sequence s = (Sequence)getSequenceAt(i);
+ s.hiddenSequences = null;
s.setColor(java.awt.Color.white);
i++;
}
{
if (groups.contains(g))
{
+ //remove any hidden representatives
+ // for(int i=0; i<g.getsiz
+ // g.getSequences()
groups.removeElement(g);
}
}