AlignmentAnnotation aa = new AlignmentAnnotation("Contact Matrix",
"Contact Matrix", _aa);
aa.graph = AlignmentAnnotation.CUSTOMRENDERER;
+ aa.graphMin = 0f;
+ aa.graphMax = 100f;
+ aa.editable = false;
+ // aa.autoCalculated = true;
contactmaps.put(aa.annotationId, cm);
addAnnotation(aa);
return aa;