fixes bug 0013013 but reveals lack of a 'features retrieved' flag that should be...

[jalview.git] / src / jalview / datamodel / Alignment.java

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 78aa015..b4e2b3f 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -390,47 +390,7 @@ public class Alignment implements AlignmentI
         return ret;\r
     }\r
 \r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     */\r
-    public void addSuperGroup(SuperGroup sg)\r
-    {\r
-        superGroup.addElement(sg);\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     */\r
-    public void removeSuperGroup(SuperGroup sg)\r
-    {\r
-        superGroup.removeElement(sg);\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     *\r
-     * @return DOCUMENT ME!\r
-     */\r
-    public SuperGroup getSuperGroup(SequenceGroup sg)\r
-    {\r
-        for (int i = 0; i < this.superGroup.size(); i++)\r
-        {\r
-            SuperGroup temp = (SuperGroup) superGroup.elementAt(i);\r
 \r
-            if (temp.sequenceGroups.contains(sg))\r
-            {\r
-                return temp;\r
-            }\r
-        }\r
-\r
-        return null;\r
-    }\r
 \r
     /**    */\r
     public void addGroup(SequenceGroup sg)\r