JAL-2599 complete documentation for HMM and HMMFile classes

[jalview.git] / src / jalview / datamodel / AlignmentAnnotation.java

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 404f51f..31aeecc 100755 (executable)
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -1506,11 +1506,21 @@ public class AlignmentAnnotation
     return graphMin < graphMax;
   }
 
+  /**
+   * Returns the HMM associated with this annotation.
+   * 
+   * @return
+   */
   public HiddenMarkovModel getHMM()
   {
     return hmm;
   }
 
+  /**
+   * Sets the HMM associated with this annotation.
+   * 
+   * @param hmm
+   */
   public void setHMM(HiddenMarkovModel hmm)
   {
     this.hmm = hmm;