*/
public class AlignmentAnnotation
{
+
private static final String ANNOTATION_ID_PREFIX = "ann";
/*
*/
private long invalidrnastruc = -2;
+ public static enum TFType
+ {
+ DEFAULT, PLDDT, DOSE;
+ }
+
+ /**
+ * the type of temperature factor plot (if it is one)
+ */
+ private TFType tfType = TFType.DEFAULT;
+
+ public void setTFType(TFType t)
+ {
+ tfType = t;
+ }
+
+ public TFType getTFType()
+ {
+ return tfType;
+ }
+
/**
* Updates the _rnasecstr field Determines the positions that base pair and
* the positions of helices based on secondary structure from a Stockholm file
: annotations[index + offset].displayCharacter == null
|| annotations[index
+ offset].displayCharacter
- .length() == 0
- ? annotations[index
- + offset].secondaryStructure
- : annotations[index
- + offset].displayCharacter
- .charAt(0));
+ .length() == 0
+ ? annotations[index
+ + offset].secondaryStructure
+ : annotations[index
+ + offset].displayCharacter
+ .charAt(0));
}
@Override