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Merge branch 'develop' into trialmerge/JAL-1950_hmmer3client
[jalview.git] / src / jalview / datamodel / AlignmentAnnotation.java
diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 7990a5c..aa1d656 100755 (executable)
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -921,6 +921,7 @@ public class AlignmentAnnotation
    * @param seqRef
    * @param startRes
    * @param alreadyMapped
+   *          - annotation are at aligned columns
    */
   public void createSequenceMapping(SequenceI seqRef, int startRes,
           boolean alreadyMapped)