JAL-3725 restrict mapped virtual feature location to mapped region

[jalview.git] / src / jalview / datamodel / AlignmentExportData.java

diff --git a/src/jalview/datamodel/AlignmentExportData.java b/src/jalview/datamodel/AlignmentExportData.java
index 46da85d..2393fe7 100644 (file)
--- a/src/jalview/datamodel/AlignmentExportData.java
+++ b/src/jalview/datamodel/AlignmentExportData.java
@@ -1,6 +1,26 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.datamodel;
 
-import jalview.gui.AlignExportSettings;
+import jalview.api.AlignExportSettingI;
 
 public class AlignmentExportData
 {
@@ -10,10 +30,10 @@ public class AlignmentExportData
 
   private int[] startEnd;
 
-  private AlignExportSettings settings;
+  private AlignExportSettingI settings;
 
   public AlignmentExportData(AlignmentI align, String[] ommit,
-          int[] startEnd, AlignExportSettings settings)
+          int[] startEnd, AlignExportSettingI settings)
   {
     this.alignment = align;
     this.omitHidden = ommit;
@@ -51,12 +71,12 @@ public class AlignmentExportData
     this.startEnd = startEnd;
   }
 
-  public AlignExportSettings getSettings()
+  public AlignExportSettingI getSettings()
   {
     return settings;
   }
 
-  public void setSettings(AlignExportSettings settings)
+  public void setSettings(AlignExportSettingI settings)
   {
     this.settings = settings;
   }