*/\r
public void deleteAllGroups();\r
\r
- /**\r
- * Adds a super group. A SuperGroup is a group of groups.\r
- *\r
- * @param sg Adds a new SuperGroup to alignment\r
- */\r
- public void addSuperGroup(SuperGroup sg);\r
-\r
- /**\r
- * Removes SuperGroup from alignment.\r
- *\r
- * @param sg This SuperGroup will be deleted from alignment.\r
- */\r
- public void removeSuperGroup(SuperGroup sg);\r
-\r
- /**\r
- * Finds any SuperGroup that a given SequenceGroup may be part of.\r
- *\r
- * @param sg SequenceGroup to search for.\r
- *\r
- * @return SuperGroup that contains the given SequenceGroup.\r
- */\r
- public SuperGroup getSuperGroup(SequenceGroup sg);\r
\r
/**\r
* Adds a new AlignmentAnnotation to this alignment\r