JAL-2629 remove annotation when exporting for hmmbuild

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 2e61f9d..561706f 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -590,5 +590,11 @@ public interface AlignmentI extends AnnotatedCollectionI
   public int[] getVisibleStartAndEndIndex(List<int[]> hiddenCols);
 
   public void setHiddenColumns(HiddenColumns cols);
+  
+  public List<SequenceI> getHMMConsensusSequences(boolean remove);
+
+  void insertSequenceAt(int i, SequenceI snew);
+
+  
 
 }