refactored Alignframe padGaps code to Alignment and Added AlignmentI method.

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 2a39847..59610b3 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -300,6 +300,11 @@ public interface AlignmentI
     public Alignment getDataset();\r
 \r
     public void setDataset(Alignment dataset);\r
+    /**\r
+     * pads sequences with gaps (to ensure the set looks like an alignment)\r
+     * @return boolean true if alignment was modified\r
+     */\r
+    public boolean padGaps();\r
 \r
 \r
 }\r