AddAnnotation with start index

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 59610b3..69a5ac6 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -248,6 +248,12 @@ public interface AlignmentI
     public void addAnnotation(AlignmentAnnotation aa);\r
 \r
     /**\r
+     * Adds a new AlignmentAnnotation to this alignment,\r
+     *  associated to Sequence starting at sequence index\r
+     */\r
+    public void addAnnotation(AlignmentAnnotation aa, SequenceI seqRef, int index);\r
+\r
+    /**\r
      * Deletes a specific AlignmentAnnotation from the alignment.\r
      *\r
      * @param aa DOCUMENT ME!\r