SuperGroups added

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 660a4fa..80b22ae 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -29,7 +29,7 @@ public interface AlignmentI {
   public void        insertColumns(SequenceI[] seqs, int pos) ;\r
 \r
   public SequenceI   findName(String name) ;\r
-  public SequenceI findbyDisplayId(String name);\r
+  public SequenceI   findbyDisplayId(String name);\r
 \r
   public int         findIndex(SequenceI s) ;\r
 \r
@@ -48,9 +48,13 @@ public interface AlignmentI {
   public void          addToGroup(SequenceGroup g, SequenceI s) ;\r
   public void          removeFromGroup(SequenceGroup g,SequenceI s) ;\r
   public void          addGroup(SequenceGroup sg) ;\r
-  public SequenceGroup addGroup() ;\r
   public void          deleteGroup(SequenceGroup g) ;\r
   public Vector        getGroups();\r
+  public void deleteAllGroups();\r
+\r
+  public void          addSuperGroup(SuperGroup sg);\r
+  public void          removeSuperGroup(SuperGroup sg);\r
+  public SuperGroup    getSuperGroup(SequenceGroup sg);\r
 \r
   // Sorting\r
   public void          sortGroups() ;\r