total annotation score is a double for maximum precision.

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index ab198c1..96b1972 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -165,6 +165,9 @@ public interface AlignmentI
 
   /**
    * Adds a new AlignmentAnnotation to this alignment
+   * @note Care should be taken to ensure that annotation is at
+   * least as wide as the longest sequence in the alignment
+   * for rendering purposes.
    */
   public void addAnnotation(AlignmentAnnotation aa);
   /**
@@ -223,7 +226,7 @@ public interface AlignmentI
 
   /**
    * Set the associated dataset for the alignment, or create one.
-   * @param dataset The dataset alignment or null to construct one. 
+   * @param dataset The dataset alignment or null to construct one.
    */
   public void setDataset(Alignment dataset);
 
@@ -240,4 +243,8 @@ public interface AlignmentI
    * @return CigarArray
    */
   public CigarArray getCompactAlignment();
+
+  public void setProperty(Object key, Object value);
+
+  public Object getProperty(Object key);
 }