Groups file is now feature file

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 416be69..9ee51e9 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -289,4 +289,28 @@ public interface AlignmentI
      * @return DOCUMENT ME!\r
      */\r
     public Vector getAAFrequency();\r
+\r
+    /**\r
+     * Returns true if alignment is nucleotide sequence\r
+     *\r
+     * @return DOCUMENT ME!\r
+     */\r
+    public boolean isNucleotide();\r
+\r
+    /**\r
+     * Set true if the alignment is a nucleotide sequence\r
+     *\r
+     * @return\r
+     */\r
+    public void setNucleotide(boolean b);\r
+\r
+\r
+    public Alignment getDataset();\r
+\r
+    public void setDataset(Alignment dataset);\r
+\r
+    public Provenance getProvenance();\r
+\r
+    public void setProvenance(Provenance prov);\r
+\r
 }\r