Alignment Annotation added

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 182b687..b46a1a7 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -1,6 +1,5 @@
 package jalview.datamodel;\r
 \r
-import jalview.jbgui.*;\r
 import java.util.*;\r
 \r
 /** Data structure to hold and manipulate a multiple sequence alignment\r
@@ -63,10 +62,15 @@ public interface AlignmentI {
   public void          sortByPID(SequenceI s) ;\r
   public void          sortByID() ;\r
 \r
+  //Annotations\r
+  public void addAnnotation(AlignmentAnnotation aa);\r
+  public void deleteAnnotation(AlignmentAnnotation aa);\r
+  public AlignmentAnnotation [] getAlignmentAnnotation();\r
+\r
   public void          setGapCharacter(char gc);\r
   public char          getGapCharacter();\r
 \r
-    public Vector        getAAFrequency();\r
+  public Vector        getAAFrequency();\r
 }\r
 \r
 \r