Remove getsfarray

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 7fe4627..e14c1e9 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -61,6 +61,13 @@ public interface AlignmentI
     public Vector getSequences();\r
 \r
     /**\r
+     * Gets sequences as a SequenceI[]\r
+     *\r
+     * @return All sequences in alignment.\r
+     */\r
+    public SequenceI [] getSequencesArray();\r
+\r
+    /**\r
      * Find a specific sequence in this alignment.\r
      *\r
      * @param i Index of required sequence.\r
@@ -225,11 +232,6 @@ public interface AlignmentI
      */\r
     public void addAnnotation(AlignmentAnnotation aa);\r
 \r
-    /**\r
-     * Adds a new AlignmentAnnotation to this alignment,\r
-     *  associated to Sequence starting at sequence index\r
-     */\r
-    public AlignmentAnnotation addAnnotation(AlignmentAnnotation aa, SequenceI seqRef);\r
 \r
     public void setAnnotationIndex(AlignmentAnnotation aa, int index);\r
 \r